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Sample GSM128571 Query DataSets for GSM128571
Status Public on Apr 30, 2007
Title 1688_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18814.3652 243.5323 G 176.1834 18899.3652 8800.0000 19691.5879 150 13.8197660446167 107.270969299751 86.8750 85.0000 14.8473 124 243.5323
1002 1 823.8229 10.6635 G 8.9339 904.8229 1080.0000 453.9718 96 11.0558128356934 101.279358985951 82.7602 81.0000 13.5196 177 10.6635
1003 1 6.2111 0.0804 L 0.8839 85.2111 86.0000 14.7622 90 10.7047443389893 96.4027494642944 78.9568 79.0000 11.6018 143 0.0804
1004 1 12.2000 0.1579 L 0.9484 92.2000 97.0000 12.2111 40 7.13649654388428 97.2114409234054 81.3387 80.0000 11.4743 128 0.1579
1005 1 12.7241 0.1647 L 0.8879 94.7241 94.0000 19.0352 29 6.07650756835938 106.680968778506 84.6484 82.0000 16.4540 188 0.1647
1006 1 18.4722 0.2391 L 0.9913 99.4722 100.0000 14.8632 36 6.7702751159668 100.349709278326 82.5989 81.0000 12.8998 188 0.2391
1007 1 37.5916 0.4866 G 1.2102 120.5916 121.0000 14.6802 71 9.50789165496826 99.6498609022886 83.0339 83.0000 11.0999 183 0.4866
1008 1 18008.3184 233.0989 G 175.0988 18095.3184 7026.0000 20406.5996 172 14.7985544204712 103.343465028641 87.2542 87.0000 10.8956 122 233.0989
1009 1 394.4845 5.1062 G 4.7225 476.4845 530.0000 202.2582 97 11.1132459640503 100.897356582614 83.1176 82.0000 12.5982 176 5.1062
1010 1 865.2278 11.1995 C 5.9860 952.2278 1019.0000 355.5148 79 10.0292530059814 159.074662868778 105.0714 87.0000 48.0498 188 11.1995
1011 1 63.1467 0.8174 G 1.3673 145.1467 143.0000 22.6749 75 9.77204990386963 106.158088367358 83.3311 82.0000 16.1054 154 0.8174
1012 1 32.3281 0.4185 G 1.1787 111.3281 110.0000 15.6924 64 9.02703380584717 94.4496108037422 79.5220 79.0000 10.2997 188 0.4185
1013 1 30.5167 0.3950 G 1.1314 110.5167 111.0000 13.3598 60 8.74038791656494 97.6814869300001 81.1279 80.0000 11.7877 178 0.3950
1014 1 8.0286 0.1039 L 0.9154 88.0286 86.0000 12.0913 35 6.67558097839355 96.1625638482258 79.7093 80.0000 10.7750 178 0.1039
1015 1 20056.3770 259.6089 G 205.0231 20139.3770 10332.0000 20845.1523 180 15.1387948989868 98.2298154318373 84.2124 83.0000 10.1532 117 259.6089
1016 1 28.0484 0.3631 G 1.1267 110.0484 108.0000 16.8422 62 8.88486671447754 97.669437212436 82.9940 82.0000 10.4463 174 0.3631
1017 1 12.6667 0.1640 L 0.9587 93.6667 96.0000 15.3478 48 7.81764030456543 97.7025054164984 80.7527 81.0000 11.1350 188 0.1640
1018 1 14.4688 0.1873 L 0.9711 94.4688 93.0000 10.7761 32 6.38307666778564 97.2805490107067 81.4396 80.0000 11.5204 188 0.1873
1019 1 11.0556 0.1431 L 0.9639 92.0556 94.0000 13.1465 36 6.7702751159668 95.5042600870934 80.6593 81.0000 9.6695 188 0.1431
1020 1 28.8889 0.3739 G 1.0392 110.8889 111.0000 15.1751 54 8.29185962677002 106.702502303352 84.6484 82.0000 16.4683 188 0.3739

Total number of rows: 54359

Table truncated, full table size 6965 Kbytes.




Supplementary file Size Download File type/resource
GSM128571.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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