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Sample GSM128574 Query DataSets for GSM128574
Status Public on Apr 30, 2007
Title 1690_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 9176.4551 99.7315 G 99.0257 9257.4551 2675.0000 10396.3613 217 16.6220626831055 93.4853899939867 80.6789 81.0000 8.3236 226 99.7315
1002 1 568.8378 6.1822 G 6.6217 649.8378 750.0000 297.5794 113 11.9948348999023 98.1379546691671 82.2093 81.0000 11.4253 88 6.1822
1003 1 2.0899 0.0227 L 0.8709 84.0899 84.0000 11.6837 89 10.6451082229614 96.5538947521293 83.2205 82.0000 9.7026 131 0.0227
1004 1 -1.3448 -0.0146 L 0.8420 81.6552 82.0000 9.7707 29 6.07650756835938 96.9730688899519 83.5088 83.0000 9.3154 177 -0.0146
1005 1 13.8775 0.1508 L 0.9983 92.8775 93.0000 11.1312 49 7.89865398406982 93.039551521456 79.4969 79.0000 9.3597 167 0.1508
1006 1 15.3404 0.1667 G 1.0121 95.3404 96.0000 11.2179 47 7.73577785491943 94.2031390074843 80.0440 80.0000 9.4688 188 0.1667
1007 1 14.3696 0.1562 G 1.0201 94.3696 94.0000 11.2720 46 7.65303993225098 92.5096175004514 79.9396 80.0000 8.3397 188 0.1562
1008 1 10034.8682 109.0609 G 104.4715 10115.8682 5241.0000 9911.7334 177 15.0121088027954 96.8289418768736 80.0686 81.0000 10.5526 106 109.0609
1009 1 276.3932 3.0039 G 3.8650 355.3932 384.0000 120.2351 89 10.6451082229614 91.9505299673287 79.1593 79.0000 8.6337 188 3.0039
1010 1 507.0120 5.5103 G 5.9041 587.0120 676.0000 231.6671 83 10.2800235748291 99.4248180709806 81.4670 80.0000 12.9499 188 5.5103
1011 1 36.4648 0.3963 G 1.2476 114.4648 113.0000 12.3229 71 9.50789165496826 91.7467202610567 78.0824 78.0000 9.1645 188 0.3963
1012 1 55.4460 0.6026 G 1.4526 134.4460 135.0000 22.4350 74 9.70668506622314 92.5582492778981 78.7967 79.0000 9.0388 188 0.6026
1013 1 16.5490 0.1799 G 1.0271 97.5490 97.0000 12.0917 51 8.0582389831543 94.9716448933012 79.4500 81.0000 9.3144 186 0.1799
1014 1 495.9484 5.3901 G 6.1992 574.9484 670.0000 261.8960 97 11.1132459640503 92.7451466941154 79.8077 79.0000 9.1634 188 5.3901
1015 1 9428.1836 102.4673 G 100.9954 9510.1836 3727.0000 9955.6094 171 14.7554721832275 94.1645654523763 81.1947 82.0000 8.1097 117 102.4673
1016 1 61.5135 0.6685 G 1.5152 140.5135 143.0000 19.0804 74 9.70668506622314 92.7385806785004 80.1868 79.0000 9.1590 188 0.6685
1017 1 45.0769 0.4899 G 1.3649 124.0769 123.0000 19.5938 78 9.96557521820068 90.9075429059142 80.2198 79.0000 7.9384 188 0.4899
1018 1 8.0000 0.0869 L 0.9415 88.0000 87.0000 11.7226 31 6.2825493812561 93.4696862550602 79.7527 80.0000 8.9798 188 0.0869
1019 1 8.1818 0.0889 L 0.9402 89.1818 91.0000 9.7560 33 6.48204469680786 94.8585497283778 81.4890 81.0000 9.2390 188 0.0889
1020 1 11.8889 0.1292 L 0.9743 93.8889 97.0000 11.1823 36 6.7702751159668 96.3687653421581 81.9548 82.0000 9.5792 183 0.1292

Total number of rows: 54359

Table truncated, full table size 6953 Kbytes.




Supplementary file Size Download File type/resource
GSM128574.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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