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Sample GSM128577 Query DataSets for GSM128577
Status Public on Mar 23, 2015
Title 1841_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12737.0840 214.9517 G 131.7873 12817.0840 5828.0000 13259.3457 207 16.2345485687256 97.2558186386786 80.8982 80.0000 11.5039 234
1002 1 626.5982 10.5745 G 7.4318 705.5982 751.0000 345.1943 114 12.0477924346924 94.9432577143374 79.0504 79.0000 10.6288 123
1003 1 3.7255 0.0629 L 0.8240 90.7255 89.0000 15.4464 51 8.0582389831543 110.102304391004 88.5932 87.0000 15.4015 122
1004 1 27.3556 0.4617 G 1.0796 113.3556 114.0000 13.6025 45 7.56939744949341 104.994593563244 86.8111 86.0000 12.6631 186
1005 1 18.0652 0.3049 G 1.0066 100.0652 102.0000 13.5605 46 7.65303993225098 99.4085721502995 82.0714 82.0000 11.6057 188
1006 1 38.3478 0.6472 G 1.2423 115.3478 114.0000 16.0297 69 9.37302112579346 92.8487083759022 77.8901 77.0000 10.5658 188
1007 1 18.8030 0.3173 G 1.0012 99.8030 102.0000 15.0738 66 9.16699600219727 99.6819321429171 83.0934 81.0000 12.4546 188
1008 1 12931.7627 218.2371 G 127.1932 13016.7627 7577.0000 13344.2559 202 16.037281036377 102.338536216048 83.8728 85.0000 11.5590 236
1009 1 404.4546 6.8256 G 5.0134 485.4546 512.0000 192.7598 101 11.3400707244873 96.8312916818292 79.6868 81.0000 10.5542 188
1010 1 387.5957 6.5411 G 4.9141 465.5957 513.0000 185.6142 94 10.9400415420532 94.747676635748 78.4121 78.0000 11.1651 188
1011 1 79.9875 1.3499 G 1.6733 157.9875 160.0000 29.2662 80 10.0925302505493 94.4188742106381 78.9890 78.0000 10.9459 188
1012 1 104.8052 1.7687 G 1.9461 183.8052 183.0000 38.9825 77 9.90148735046387 94.4486742622396 78.6154 79.0000 10.2991 188
1013 1 43.4247 0.7328 G 1.2620 124.4247 123.0000 18.8817 73 9.64087581634521 98.5915964135413 81.0989 81.0000 11.7277 188
1014 1 20.1250 0.3396 G 1.0365 98.1250 98.0000 15.4747 56 8.444016456604 94.6653169536877 78.5055 78.0000 11.1102 188
1015 1 13966.5283 235.6999 G 143.5663 14048.5283 7453.0000 14334.4404 235 17.2977256774902 97.8539418739619 82.1973 82.0000 10.5693 231
1016 1 49.8795 0.8418 G 1.3577 129.8795 130.0000 20.2535 83 10.2800235748291 95.6631390843576 80.7486 80.0000 10.4421 185
1017 1 25.7564 0.4347 G 1.0887 105.7564 105.0000 11.8853 78 9.96557521820068 97.1366321829339 80.4273 80.0000 11.4244 114
1018 1 8.8222 0.1489 L 0.9250 86.8222 86.0000 12.3212 90 10.7047443389893 93.8596142505433 78.4333 78.0000 10.5731 186
1019 1 19.5294 0.3296 G 1.0488 96.5294 97.0000 12.1999 51 8.0582389831543 92.0379596570664 78.4314 77.0000 10.0253 159
1020 1 41.5541 0.7013 G 1.1825 127.5541 128.0000 26.5865 74 9.70668506622314 107.868523912313 86.1039 86.0000 14.5790 160

Total number of rows: 54359

Table truncated, full table size 6561 Kbytes.




Supplementary file Size Download File type/resource
GSM128577.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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