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GEO accession:
Sample GSM128577
Query DataSets for GSM128577
Status
Public on Mar 23, 2015
Title
1841_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, radiotherapy alone
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, radiotherapy alone
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
12737.0840
214.9517
G
131.7873
12817.0840
5828.0000
13259.3457
207
16.2345485687256
97.2558186386786
80.8982
80.0000
11.5039
234
1002
1
626.5982
10.5745
G
7.4318
705.5982
751.0000
345.1943
114
12.0477924346924
94.9432577143374
79.0504
79.0000
10.6288
123
1003
1
3.7255
0.0629
L
0.8240
90.7255
89.0000
15.4464
51
8.0582389831543
110.102304391004
88.5932
87.0000
15.4015
122
1004
1
27.3556
0.4617
G
1.0796
113.3556
114.0000
13.6025
45
7.56939744949341
104.994593563244
86.8111
86.0000
12.6631
186
1005
1
18.0652
0.3049
G
1.0066
100.0652
102.0000
13.5605
46
7.65303993225098
99.4085721502995
82.0714
82.0000
11.6057
188
1006
1
38.3478
0.6472
G
1.2423
115.3478
114.0000
16.0297
69
9.37302112579346
92.8487083759022
77.8901
77.0000
10.5658
188
1007
1
18.8030
0.3173
G
1.0012
99.8030
102.0000
15.0738
66
9.16699600219727
99.6819321429171
83.0934
81.0000
12.4546
188
1008
1
12931.7627
218.2371
G
127.1932
13016.7627
7577.0000
13344.2559
202
16.037281036377
102.338536216048
83.8728
85.0000
11.5590
236
1009
1
404.4546
6.8256
G
5.0134
485.4546
512.0000
192.7598
101
11.3400707244873
96.8312916818292
79.6868
81.0000
10.5542
188
1010
1
387.5957
6.5411
G
4.9141
465.5957
513.0000
185.6142
94
10.9400415420532
94.747676635748
78.4121
78.0000
11.1651
188
1011
1
79.9875
1.3499
G
1.6733
157.9875
160.0000
29.2662
80
10.0925302505493
94.4188742106381
78.9890
78.0000
10.9459
188
1012
1
104.8052
1.7687
G
1.9461
183.8052
183.0000
38.9825
77
9.90148735046387
94.4486742622396
78.6154
79.0000
10.2991
188
1013
1
43.4247
0.7328
G
1.2620
124.4247
123.0000
18.8817
73
9.64087581634521
98.5915964135413
81.0989
81.0000
11.7277
188
1014
1
20.1250
0.3396
G
1.0365
98.1250
98.0000
15.4747
56
8.444016456604
94.6653169536877
78.5055
78.0000
11.1102
188
1015
1
13966.5283
235.6999
G
143.5663
14048.5283
7453.0000
14334.4404
235
17.2977256774902
97.8539418739619
82.1973
82.0000
10.5693
231
1016
1
49.8795
0.8418
G
1.3577
129.8795
130.0000
20.2535
83
10.2800235748291
95.6631390843576
80.7486
80.0000
10.4421
185
1017
1
25.7564
0.4347
G
1.0887
105.7564
105.0000
11.8853
78
9.96557521820068
97.1366321829339
80.4273
80.0000
11.4244
114
1018
1
8.8222
0.1489
L
0.9250
86.8222
86.0000
12.3212
90
10.7047443389893
93.8596142505433
78.4333
78.0000
10.5731
186
1019
1
19.5294
0.3296
G
1.0488
96.5294
97.0000
12.1999
51
8.0582389831543
92.0379596570664
78.4314
77.0000
10.0253
159
1020
1
41.5541
0.7013
G
1.1825
127.5541
128.0000
26.5865
74
9.70668506622314
107.868523912313
86.1039
86.0000
14.5790
160
Total number of rows:
54359
Table truncated, full table size
6561 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128577.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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