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Sample GSM128599 Query DataSets for GSM128599
Status Public on Apr 30, 2007
Title 2788_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5794.2437 123.1508 G 58.2304 5879.2437 3616.0000 5701.0845 158 14.1835060119629 100.965194189227 85.7583 85.0000 10.6435 124 123.1508
1002 1 221.3678 4.7049 G 3.1343 304.3678 331.0000 94.2449 87 10.5248203277588 97.1096848298827 83.0398 83.0000 9.4065 182 4.7049
1003 1 24.6769 0.5245 G 1.1058 105.6769 102.0000 14.6183 65 9.09728336334229 95.5636252464195 81.6298 81.0000 9.7091 187 0.5245
1004 1 32.6610 0.6942 G 1.1803 115.6610 109.0000 23.8879 59 8.66724491119385 97.9935719663234 82.6889 83.0000 9.9957 186 0.6942
1005 1 21.9811 0.4672 G 1.0905 104.9811 106.0000 11.3312 53 8.21472454071045 96.2663959774403 82.3297 83.0000 8.8443 188 0.4672
1006 1 29.0847 0.6182 G 1.1648 112.0847 107.0000 27.3194 59 8.66724491119385 96.2270521814286 83.1854 83.0000 8.8180 184 0.6182
1007 1 26.3676 0.5604 G 1.1296 108.3676 106.0000 11.6353 68 9.30485343933105 95.932420287928 82.7348 82.0000 9.2883 187 0.5604
1008 1 6221.9341 132.2409 G 63.9119 6305.9341 4284.0000 6063.3296 154 14.0028171539307 98.6660230042466 83.3083 84.0000 9.7774 124 132.2409
1009 1 272.5529 5.7928 G 3.6829 355.5529 381.0000 115.6027 85 10.4031419754028 96.5414399727381 82.1829 83.0000 9.0276 181 5.7928
1010 1 266.8875 5.6724 G 3.6669 347.8875 390.0000 130.4448 80 10.0925302505493 94.8721057556249 80.8771 81.0000 9.2481 185 5.6724
1011 1 32.4516 0.6897 G 1.1895 114.4516 113.0000 17.7170 62 8.88486671447754 96.2199253643688 81.8475 82.0000 9.4799 183 0.6897
1012 1 31.4464 0.6684 G 1.1735 112.4464 112.0000 12.1551 56 8.444016456604 95.8235188288281 81.5824 81.0000 9.8823 188 0.6684
1013 1 23.4462 0.4983 G 1.0969 104.4462 104.0000 11.6988 65 9.09728336334229 95.2214945321082 81.0110 81.0000 9.4810 187 0.4983
1014 1 19.6615 0.4179 G 1.0746 101.6615 99.0000 10.0342 65 9.09728336334229 94.6039909895339 81.6374 82.0000 8.4027 188 0.4179
1015 1 6278.5732 133.4447 G 66.5083 6360.5732 3727.0000 6213.4336 166 14.5381488800049 95.6358351617707 83.0583 82.0000 9.0906 124 133.4447
1016 1 34.1622 0.7261 G 1.2342 115.1622 116.0000 13.3943 74 9.70668506622314 93.312384536759 80.6319 81.0000 8.2083 188 0.7261
1017 1 27.8636 0.5922 G 1.1095 108.8636 110.0000 11.4215 66 9.16699600219727 98.1218851869557 82.6099 81.0000 11.4146 188 0.5922
1018 1 22.6500 0.4814 G 1.0892 105.6500 105.0000 14.2089 60 8.74038791656494 96.993528704513 82.1374 83.0000 9.3290 188 0.4814
1019 1 25.7286 0.5468 G 1.1303 108.7286 103.0000 26.0702 70 9.44069766998291 96.1977074713534 82.3462 83.0000 8.7985 188 0.5468
1020 1 24.1231 0.5127 G 1.1138 106.1231 106.0000 14.3028 65 9.09728336334229 95.2798304918397 82.3846 82.0000 8.8532 188 0.5127

Total number of rows: 54359

Table truncated, full table size 6934 Kbytes.




Supplementary file Size Download File type/resource
GSM128599.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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