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Sample GSM128601 Query DataSets for GSM128601
Status Public on Apr 30, 2007
Title 2900_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6440.8042 142.3257 G 64.8963 6526.8042 3919.0000 6385.6216 145 13.5874843597412 100.572893607186 86.7167 86.0000 9.7153 124 142.3257
1002 1 185.2250 4.0930 G 2.6739 271.2250 297.0000 75.0057 80 10.0925302505493 101.434792843355 86.3022 86.0000 10.2899 188 4.0930
1003 1 188.3766 4.1627 G 2.5584 275.3766 118.0000 489.2198 77 9.90148735046387 107.637160133741 89.3238 87.0000 13.7581 109 4.1627
1004 1 28.5323 0.6305 G 1.1465 113.5323 113.0000 12.3337 62 8.88486671447754 99.0214590703929 84.9725 85.0000 9.3476 188 0.6305
1005 1 30.4571 0.6730 G 1.1582 113.4571 110.0000 21.5742 70 9.44069766998291 97.9612499589576 84.4121 83.0000 9.9742 188 0.6730
1006 1 25.9583 0.5736 G 1.1043 112.9583 113.0000 11.3907 48 7.81764030456543 102.285041138513 87.7253 87.0000 10.1900 188 0.5736
1007 1 36.1429 0.7987 G 1.2103 121.1429 116.0000 16.2733 63 8.95623207092285 100.095598973021 85.7198 85.0000 10.0637 188 0.7987
1008 1 6045.9321 133.6000 G 60.4127 6132.9321 2657.0000 6341.7441 149 13.7736234664917 101.517226329279 86.4153 87.0000 9.6781 122 133.6000
1009 1 219.7436 4.8558 G 2.8746 304.7436 339.0000 88.0694 78 9.96557521820068 106.014096813847 87.4066 85.0000 14.0094 188 4.8558
1010 1 117.6479 2.5997 G 2.0387 202.6479 217.0000 55.7694 71 9.50789165496826 99.4022822250794 85.4231 85.0000 9.6015 188 2.5997
1011 1 37.6349 0.8316 G 1.2239 123.6349 125.0000 16.3826 63 8.95623207092285 101.018071778676 85.7527 86.0000 10.0120 188 0.8316
1012 1 31.6034 0.6984 G 1.1804 116.6034 115.0000 11.5444 58 8.59348011016846 98.7804895980313 85.5549 85.0000 9.1870 188 0.6984
1013 1 29.9048 0.6608 G 1.1611 114.9048 114.0000 12.6236 63 8.95623207092285 98.9655907835778 83.8407 85.0000 9.3104 188 0.6608
1014 1 28.6949 0.6341 G 1.1327 112.6949 112.0000 13.8592 59 8.66724491119385 99.4959988094414 84.6813 84.0000 10.3307 188 0.6341
1015 1 6547.5601 144.6848 G 65.8150 6632.5601 3947.0000 6306.3149 143 13.4934520721436 100.775761408904 86.4250 85.0000 10.5172 124 144.6848
1016 1 46.6615 1.0311 G 1.3440 130.6615 131.0000 15.7883 65 9.09728336334229 97.220697773927 84.2308 84.0000 8.8138 188 1.0311
1017 1 80.3529 1.7756 G 1.6596 165.3529 117.0000 153.9417 68 9.30485343933105 99.6321339483397 85.5824 85.0000 9.7548 188 1.7756
1018 1 27.5091 0.6079 G 1.1485 112.5091 113.0000 14.0245 55 8.36828422546387 97.9598015882489 86.2692 85.0000 8.6399 188 0.6079
1019 1 25.9464 0.5734 G 1.0939 112.9464 112.0000 12.2422 56 8.444016456604 103.252339968475 86.7527 87.0000 10.8349 188 0.5734
1020 1 43.1667 0.9539 G 1.2510 130.1667 124.0000 36.9403 54 8.29185962677002 104.046811657176 87.3571 87.0000 11.3645 188 0.9539

Total number of rows: 54359

Table truncated, full table size 6925 Kbytes.




Supplementary file Size Download File type/resource
GSM128601.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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