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Sample GSM128605 Query DataSets for GSM128605
Status Public on Sep 28, 2010
Title 176_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 11822.5352 144.8968 G 129.4583 11899.5352 4170.0000 13055.4023 219 16.698486328125 91.9179239188433 77.1031 77.0000 9.9453 231
1002 1 669.9224 8.2106 G 8.4884 745.9224 826.0000 383.1481 118 12.2573356628418 87.8759529461041 75.8947 76.0000 7.9173 97
1003 1 -3.8679 -0.0474 L 0.7890 75.1321 72.0000 13.4824 53 8.21472454071045 95.2248467100017 79.9565 79.0000 10.8166 94
1004 1 15.8077 0.1937 L 0.9915 94.8077 97.0000 12.4962 52 8.1368579864502 95.6201148793385 79.3571 79.0000 11.0801 188
1005 1 4.6000 0.0564 L 0.8841 78.6000 80.0000 10.1424 35 6.67558097839355 88.9025219345704 74.3297 74.0000 9.9350 188
1006 1 26.8507 0.3291 G 1.1230 99.8507 98.0000 13.6974 67 9.23618125915527 88.9181754342757 73.2308 73.0000 10.6121 188
1007 1 14.0000 0.1716 L 0.9833 86.0000 87.0000 11.7925 47 7.73577785491943 87.4561519866135 73.9486 72.0000 10.3041 181
1008 1 12436.7188 152.4242 G 131.5577 12514.7188 4651.0000 13422.1855 214 16.506763458252 95.1272062907754 79.2544 78.0000 11.4181 236
1009 1 407.0495 4.9888 G 5.2859 483.0495 528.0000 195.2294 103 11.4517974853516 91.3836977288311 75.1044 76.0000 10.2558 188
1010 1 501.2021 6.1427 G 6.3213 578.2021 662.0000 240.9992 94 10.9400415420532 91.4686732914654 77.4057 77.0000 9.6458 181
1011 1 91.5375 1.1219 G 1.8232 170.5375 169.0000 30.8796 80 10.0925302505493 93.5375145268418 78.1484 79.0000 9.6917 188
1012 1 151.3488 1.8549 G 2.4962 226.3488 227.0000 62.3877 86 10.4641580581665 90.6789352833526 75.8389 75.0000 10.4526 186
1013 1 32.6400 0.4000 G 1.1983 107.6400 105.0000 13.5259 75 9.77204990386963 89.8254225859741 75.9444 75.0000 9.8836 186
1014 1 20.3830 0.2498 G 1.0559 95.3830 95.0000 14.9958 47 7.73577785491943 90.3336541536941 75.3278 75.0000 10.2224 186
1015 1 13860.4092 169.8729 G 149.2712 13938.4092 5307.0000 15019.5576 241 17.5171546936035 93.3763971051165 78.5634 78.0000 10.2509 221
1016 1 36.6494 0.4492 G 1.2314 114.6494 114.0000 16.5912 77 9.90148735046387 93.1081810829435 78.4942 78.0000 10.0721 178
1017 1 16.2154 0.1987 G 1.0206 90.2154 91.0000 12.5545 65 9.09728336334229 88.3982935722077 74.7964 74.0000 9.5989 173
1018 1 2.8846 0.0354 L 0.8571 80.8846 78.0000 11.3944 52 8.1368579864502 94.369055830735 76.5702 78.0000 10.9127 118
1019 1 17.8333 0.2186 G 1.0281 92.8333 91.0000 13.4974 48 7.81764030456543 90.2994508348794 75.7485 75.0000 10.1996 173
1020 1 58.5000 0.7170 G 1.2522 148.5000 148.0000 17.6192 96 11.0558128356934 118.59288182784 90.9684 90.0000 19.0619 97

Total number of rows: 54359

Table truncated, full table size 6589 Kbytes.




Supplementary file Size Download File type/resource
GSM128605.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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