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GEO accession:
Sample GSM128622
Query DataSets for GSM128622
Status
Public on Sep 28, 2010
Title
2032_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
21762.4531
142.9108
G
175.1894
21869.4531
8233.0000
24035.7207
161
14.3175268173218
124.833182274975
107.3000
107.0000
11.8888
124
1002
1
1064.2222
6.9886
G
9.1750
1173.2222
1392.0000
568.4970
101
11.3400707244873
127.870958715732
109.8785
109.0000
12.5806
187
1003
1
7.2500
0.0476
L
0.9191
119.2500
122.0000
15.4697
32
6.38307666778564
129.749993433649
112.5359
112.0000
11.8333
187
1004
1
15.0000
0.0985
L
0.9781
124.0000
122.0000
14.9573
43
7.3992772102356
126.772625263524
108.2088
109.0000
11.8484
188
1005
1
16.9111
0.1111
L
0.9781
125.9111
132.0000
14.5447
45
7.56939744949341
128.734727910162
108.9835
109.0000
13.1565
188
1006
1
39.2500
0.2577
G
1.1703
147.2500
148.0000
15.8151
56
8.444016456604
125.822271337828
107.8187
108.0000
11.8815
188
1007
1
60.0278
0.3942
G
1.3391
169.0278
169.0000
23.4710
72
9.57461452484131
126.225556962011
108.8791
109.0000
11.4837
188
1008
1
22562.8848
148.1671
G
174.2757
22673.8848
12586.0000
23189.6738
133
13.0131034851074
130.103561669263
110.4583
111.0000
12.7357
124
1009
1
841.9663
5.5291
G
7.6246
947.9663
1102.0000
460.1581
89
10.6451082229614
124.329919189251
106.6298
106.0000
12.2199
187
1010
1
675.4074
4.4353
G
6.2488
782.4074
872.0000
367.9749
81
10.1554126739502
125.208608666111
107.0055
107.0000
12.1391
188
1011
1
114.0857
0.7492
G
1.7597
223.0857
229.0000
46.5034
70
9.44069766998291
126.777382151879
108.2253
109.0000
11.8516
188
1012
1
114.0000
0.7486
G
1.7495
222.0000
231.0000
46.6527
68
9.30485343933105
126.894095847249
108.2747
108.0000
12.5961
188
1013
1
63.0923
0.4143
G
1.3700
169.0923
171.0000
25.6225
65
9.09728336334229
123.42143866974
106.9396
106.0000
11.6143
188
1014
1
168.1507
1.1042
G
2.1761
276.1507
288.0000
71.2112
73
9.64087581634521
126.902629351644
108.3681
108.0000
12.6017
188
1015
1
23919.1680
157.0736
G
189.1564
24028.1680
16754.0000
24266.0332
121
12.4121704101563
127.028075470347
109.7308
109.0000
12.0187
188
1016
1
171.4865
1.1261
G
2.2480
278.4865
291.0000
79.5194
74
9.70668506622314
123.879894541777
106.9176
107.0000
11.2533
188
1017
1
26.0192
0.1709
G
1.0571
134.0192
134.0000
13.4171
52
8.1368579864502
126.779576015381
108.9000
108.0000
12.5197
156
1018
1
6.4824
0.0426
L
0.9008
110.4824
110.0000
13.9002
85
10.4031419754028
122.648906705549
105.7796
104.0000
12.4326
192
1019
1
23.3158
0.1531
G
1.0323
129.3158
133.0000
15.1242
38
6.95579624176025
125.270312061537
106.1910
106.0000
12.8469
184
1020
1
40.6154
0.2667
G
1.1754
149.6154
150.0000
17.3816
52
8.1368579864502
127.287541394204
107.9438
109.0000
12.1917
184
Total number of rows:
54359
Table truncated, full table size
6782 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128622.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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