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Sample GSM128622 Query DataSets for GSM128622
Status Public on Sep 28, 2010
Title 2032_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 21762.4531 142.9108 G 175.1894 21869.4531 8233.0000 24035.7207 161 14.3175268173218 124.833182274975 107.3000 107.0000 11.8888 124
1002 1 1064.2222 6.9886 G 9.1750 1173.2222 1392.0000 568.4970 101 11.3400707244873 127.870958715732 109.8785 109.0000 12.5806 187
1003 1 7.2500 0.0476 L 0.9191 119.2500 122.0000 15.4697 32 6.38307666778564 129.749993433649 112.5359 112.0000 11.8333 187
1004 1 15.0000 0.0985 L 0.9781 124.0000 122.0000 14.9573 43 7.3992772102356 126.772625263524 108.2088 109.0000 11.8484 188
1005 1 16.9111 0.1111 L 0.9781 125.9111 132.0000 14.5447 45 7.56939744949341 128.734727910162 108.9835 109.0000 13.1565 188
1006 1 39.2500 0.2577 G 1.1703 147.2500 148.0000 15.8151 56 8.444016456604 125.822271337828 107.8187 108.0000 11.8815 188
1007 1 60.0278 0.3942 G 1.3391 169.0278 169.0000 23.4710 72 9.57461452484131 126.225556962011 108.8791 109.0000 11.4837 188
1008 1 22562.8848 148.1671 G 174.2757 22673.8848 12586.0000 23189.6738 133 13.0131034851074 130.103561669263 110.4583 111.0000 12.7357 124
1009 1 841.9663 5.5291 G 7.6246 947.9663 1102.0000 460.1581 89 10.6451082229614 124.329919189251 106.6298 106.0000 12.2199 187
1010 1 675.4074 4.4353 G 6.2488 782.4074 872.0000 367.9749 81 10.1554126739502 125.208608666111 107.0055 107.0000 12.1391 188
1011 1 114.0857 0.7492 G 1.7597 223.0857 229.0000 46.5034 70 9.44069766998291 126.777382151879 108.2253 109.0000 11.8516 188
1012 1 114.0000 0.7486 G 1.7495 222.0000 231.0000 46.6527 68 9.30485343933105 126.894095847249 108.2747 108.0000 12.5961 188
1013 1 63.0923 0.4143 G 1.3700 169.0923 171.0000 25.6225 65 9.09728336334229 123.42143866974 106.9396 106.0000 11.6143 188
1014 1 168.1507 1.1042 G 2.1761 276.1507 288.0000 71.2112 73 9.64087581634521 126.902629351644 108.3681 108.0000 12.6017 188
1015 1 23919.1680 157.0736 G 189.1564 24028.1680 16754.0000 24266.0332 121 12.4121704101563 127.028075470347 109.7308 109.0000 12.0187 188
1016 1 171.4865 1.1261 G 2.2480 278.4865 291.0000 79.5194 74 9.70668506622314 123.879894541777 106.9176 107.0000 11.2533 188
1017 1 26.0192 0.1709 G 1.0571 134.0192 134.0000 13.4171 52 8.1368579864502 126.779576015381 108.9000 108.0000 12.5197 156
1018 1 6.4824 0.0426 L 0.9008 110.4824 110.0000 13.9002 85 10.4031419754028 122.648906705549 105.7796 104.0000 12.4326 192
1019 1 23.3158 0.1531 G 1.0323 129.3158 133.0000 15.1242 38 6.95579624176025 125.270312061537 106.1910 106.0000 12.8469 184
1020 1 40.6154 0.2667 G 1.1754 149.6154 150.0000 17.3816 52 8.1368579864502 127.287541394204 107.9438 109.0000 12.1917 184

Total number of rows: 54359

Table truncated, full table size 6782 Kbytes.




Supplementary file Size Download File type/resource
GSM128622.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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