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Sample GSM128935 Query DataSets for GSM128935
Status Public on Sep 28, 2010
Title 2038_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 23936.5957 196.1202 G 176.1018 24050.5957 10388.0000 25332.4473 180 15.1387948989868 136.572088578036 114.3500 114.0000 15.0481 124
1002 1 1010.0594 8.2757 G 8.6592 1122.0594 1338.0000 513.1842 103 11.4517974853516 129.580582636759 112.8022 112.0000 11.7204 188
1003 1 12.2889 0.1007 L 0.9211 126.2889 128.0000 14.9876 90 10.7047443389893 137.11236171154 116.6354 114.0000 15.4082 187
1004 1 33.0833 0.2711 G 1.1067 144.0833 144.0000 19.1055 72 9.57461452484131 130.192298474273 112.0182 111.0000 12.7949 114
1005 1 27.1724 0.2226 G 1.0591 136.1724 134.0000 18.3351 58 8.59348011016846 128.576535884745 109.9780 109.0000 13.0510 188
1006 1 52.7612 0.4323 G 1.2748 161.7612 162.0000 19.6910 67 9.23618125915527 126.890941223259 109.2418 109.0000 11.9273 188
1007 1 36.0290 0.2952 G 1.1260 146.0290 143.0000 17.3339 69 9.37302112579346 129.68805838239 110.8736 110.0000 13.1254 188
1008 1 24503.7383 200.7670 G 189.9694 24615.7383 9265.0000 26250.4980 210 16.3517684936523 129.577413092803 112.4977 112.0000 11.7183 229
1009 1 810.8929 6.6439 G 6.8886 924.8929 1013.0000 384.3463 114 12.0477924346924 134.265178788488 114.1000 114.0000 13.5101 124
1010 1 872.1354 7.1457 G 7.6422 981.1354 1151.0000 400.8626 96 11.0558128356934 128.383202734495 109.9558 109.0000 12.9221 187
1011 1 189.7755 1.5549 G 2.3316 298.7755 311.0000 68.3219 98 11.1703834533691 128.14306069138 109.1429 109.0000 12.7620 188
1012 1 138.1294 1.1317 G 1.9389 246.1294 249.0000 46.6392 85 10.4031419754028 126.942253929251 108.2611 108.0000 12.6282 186
1013 1 58.4342 0.4788 G 1.2938 169.4342 172.0000 18.2110 76 9.83698177337646 130.954677862559 111.3846 111.0000 13.3031 188
1014 1 121.3933 0.9946 G 1.7896 232.3933 232.0000 39.7734 89 10.6451082229614 129.857008186871 110.8956 111.0000 12.5713 188
1015 1 25818.2617 211.5373 G 183.8429 25936.2617 11938.0000 27102.2207 162 14.3619222640991 141.078389210653 117.7583 118.0000 15.3856 124
1016 1 387.5714 3.1755 G 3.6662 502.5714 563.0000 177.9926 84 10.3417663574219 137.083199616884 115.4056 115.0000 14.7221 186
1017 1 28.5333 0.2338 G 1.0613 140.5333 139.0000 19.3501 45 7.56939744949341 132.413365259571 112.7637 112.0000 13.6089 188
1018 1 16.2683 0.1333 L 0.9805 128.2683 131.0000 15.8176 41 7.22515201568604 130.82128538043 111.6205 112.0000 12.5475 172
1019 1 8.9647 0.0735 L 0.8911 120.9647 118.0000 18.6222 85 10.4031419754028 135.743701677972 112.9342 112.0000 15.8291 236
1020 1 30.7660 0.2521 G 1.0790 144.7660 146.0000 20.6740 47 7.73577785491943 134.162323626661 113.1978 114.0000 13.4415 188

Total number of rows: 54359

Table truncated, full table size 6771 Kbytes.




Supplementary file Size Download File type/resource
GSM128935.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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