NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128936 Query DataSets for GSM128936
Status Public on Mar 23, 2015
Title 2038_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 21879.4668 215.7587 G 173.1445 21985.4668 10422.0000 23278.7520 141 13.3987598419189 126.977596842215 107.3667 106.0000 13.9851 124
1002 1 893.8315 8.8143 G 8.1176 998.8315 1128.0000 498.9708 89 10.6451082229614 123.044470674177 106.0166 105.0000 12.0296 187
1003 1 6.6747 0.0658 L 0.8671 114.6747 116.0000 13.4362 83 10.2800235748291 132.244624784346 111.1379 108.0000 16.1631 180
1004 1 22.0571 0.2175 G 1.0177 126.0571 125.0000 13.2664 35 6.67558097839355 123.859259377258 105.7740 104.0000 13.2395 152
1005 1 12.9551 0.1278 L 0.9606 114.9551 116.0000 15.5483 89 10.6451082229614 119.667246359834 103.5099 102.0000 11.7782 210
1006 1 38.6098 0.3807 G 1.1745 143.6098 142.0000 15.6795 41 7.22515201568604 122.271537935474 105.7730 105.0000 11.5144 169
1007 1 28.1522 0.2776 G 1.0862 136.1522 135.0000 10.7965 46 7.65303993225098 125.347449995835 107.0989 108.0000 11.5650 188
1008 1 23563.2344 232.3627 G 183.9069 23672.2344 9907.0000 24924.2070 160 14.2729930877686 128.718582882487 109.2000 109.0000 13.1457 124
1009 1 730.4086 7.2027 G 6.7566 836.4086 928.0000 385.4928 93 10.8816947937012 123.792189728926 105.6319 106.0000 11.8615 188
1010 1 1040.1868 10.2575 G 9.3953 1143.1868 1337.0000 600.4119 91 10.7640514373779 121.676403540915 103.8287 103.0000 12.4509 187
1011 1 120.6375 1.1896 G 1.8482 223.6375 230.0000 46.5366 80 10.0925302505493 121.001721107339 103.1517 103.0000 12.0011 184
1012 1 164.4937 1.6221 G 2.2319 267.4937 282.0000 73.2493 79 10.0292530059814 119.849545133544 103.5525 103.0000 11.2330 187
1013 1 55.9846 0.5521 G 1.2951 161.9846 158.0000 21.4766 65 9.09728336334229 125.076258636801 106.0000 106.0000 12.7175 187
1014 1 113.4359 1.1186 G 1.8059 215.4359 223.0000 43.2703 78 9.96557521820068 119.297303695106 103.1538 102.0000 11.5315 188
1015 1 21327.4648 210.3153 G 174.8840 21431.4648 12286.0000 22724.1602 129 12.8159236907959 122.54675318817 105.9500 104.0000 12.3645 124
1016 1 199.7183 1.9695 G 2.5164 303.7183 334.0000 95.4857 71 9.50789165496826 120.696762178427 105.1637 104.0000 11.1312 177
1017 1 17.7179 0.1747 G 1.0011 119.7179 122.0000 10.8248 39 7.04672574996948 119.586453265557 102.7088 102.0000 11.7243 188
1018 1 10.2386 0.1010 L 0.9491 112.2386 111.0000 14.7301 88 10.5851345062256 118.257396488537 102.9424 102.0000 10.8383 197
1019 1 16.8333 0.1660 L 0.9875 118.8333 121.0000 16.7700 42 7.3127326965332 120.336406247859 104.3237 102.0000 12.2243 179
1020 1 21.3023 0.2101 L 0.9518 133.3023 130.0000 22.7561 43 7.3992772102356 140.049969424916 113.1918 112.0000 18.7000 152

Total number of rows: 54359

Table truncated, full table size 6747 Kbytes.




Supplementary file Size Download File type/resource
GSM128936.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap