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Sample GSM128938 Query DataSets for GSM128938
Status Public on Sep 28, 2010
Title 2312_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 17823.0449 192.8225 G 137.4366 17935.0449 4410.0000 21288.3320 182 15.2226667404175 130.496890488921 113.8000 112.0000 12.3313 124
1002 1 1077.4456 11.6566 G 9.2015 1187.4456 1354.0000 565.0413 103 11.4517974853516 129.049035811759 110.0330 110.0000 12.6994 188
1003 1 5.6667 0.0613 L 0.8834 116.6667 117.0000 14.1727 84 10.3417663574219 132.070319042901 111.4302 111.0000 14.0469 178
1004 1 11.1856 0.1210 L 0.9418 123.1856 122.0000 18.3389 97 11.1132459640503 130.802526063375 111.8026 112.0000 12.5350 163
1005 1 25.6078 0.2770 G 1.0539 135.6078 133.0000 15.9104 51 8.0582389831543 128.676030158911 108.7088 110.0000 12.4507 188
1006 1 30.3333 0.3282 G 1.0824 140.3333 141.0000 16.0197 54 8.29185962677002 129.655800130272 109.4890 110.0000 13.1039 188
1007 1 24.4000 0.2640 G 1.0466 136.4000 137.0000 15.2053 50 7.97884559631348 130.327050589908 111.5632 112.0000 12.2180 180
1008 1 16881.3301 182.6344 G 130.6594 16992.3301 3723.0000 20153.0215 166 14.5381488800049 130.050596685022 111.1583 111.0000 12.7004 124
1009 1 670.3372 7.2522 G 6.0187 780.3372 894.0000 354.0041 86 10.4641580581665 129.651501811611 109.8901 110.0000 13.1010 188
1010 1 954.9425 10.3313 G 8.3667 1062.9425 1268.0000 588.5971 87 10.5248203277588 127.043803927956 109.1538 108.0000 12.6959 188
1011 1 94.8732 1.0264 G 1.5709 205.8732 205.0000 37.9748 71 9.50789165496826 131.058419535544 110.4000 111.0000 13.3723 186
1012 1 66.0781 0.7149 G 1.3664 175.0781 176.0000 22.2446 64 9.02703380584717 128.134109573875 109.4286 109.0000 12.7561 188
1013 1 73.3636 0.7937 G 1.3941 183.3636 184.0000 26.7483 66 9.16699600219727 131.530968658895 109.2802 110.0000 14.3540 188
1014 1 57.4462 0.6215 G 1.2910 167.4462 166.0000 26.4133 65 9.09728336334229 129.700397317312 110.4835 110.0000 13.1336 188
1015 1 15811.9814 171.0654 G 119.4547 15925.9814 3468.0000 19169.1855 160 14.2729930877686 133.322320700356 114.9231 114.0000 12.8815 121
1016 1 83.6406 0.9049 G 1.4235 196.6406 199.0000 27.6667 64 9.02703380584717 138.140825764251 114.0331 113.0000 16.7605 187
1017 1 36.2407 0.3921 G 1.1376 148.2407 146.0000 22.9096 54 8.29185962677002 130.31175791231 111.1703 112.0000 12.2078 188
1018 1 14.1613 0.1532 L 0.9387 131.1613 136.0000 18.7188 31 6.2825493812561 139.73035989825 117.3452 117.0000 15.1536 174
1019 1 30.5192 0.3302 G 1.0538 147.5192 143.0000 30.7812 52 8.1368579864502 139.991569832489 118.0471 117.0000 15.3277 176
1020 1 42.2364 0.4569 G 1.1212 152.2364 150.0000 17.5737 55 8.36828422546387 135.78179495282 113.0165 110.0000 17.1879 188

Total number of rows: 54359

Table truncated, full table size 6761 Kbytes.




Supplementary file Size Download File type/resource
GSM128938.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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