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GEO accession:
Sample GSM128938
Query DataSets for GSM128938
Status
Public on Sep 28, 2010
Title
2312_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
17823.0449
192.8225
G
137.4366
17935.0449
4410.0000
21288.3320
182
15.2226667404175
130.496890488921
113.8000
112.0000
12.3313
124
1002
1
1077.4456
11.6566
G
9.2015
1187.4456
1354.0000
565.0413
103
11.4517974853516
129.049035811759
110.0330
110.0000
12.6994
188
1003
1
5.6667
0.0613
L
0.8834
116.6667
117.0000
14.1727
84
10.3417663574219
132.070319042901
111.4302
111.0000
14.0469
178
1004
1
11.1856
0.1210
L
0.9418
123.1856
122.0000
18.3389
97
11.1132459640503
130.802526063375
111.8026
112.0000
12.5350
163
1005
1
25.6078
0.2770
G
1.0539
135.6078
133.0000
15.9104
51
8.0582389831543
128.676030158911
108.7088
110.0000
12.4507
188
1006
1
30.3333
0.3282
G
1.0824
140.3333
141.0000
16.0197
54
8.29185962677002
129.655800130272
109.4890
110.0000
13.1039
188
1007
1
24.4000
0.2640
G
1.0466
136.4000
137.0000
15.2053
50
7.97884559631348
130.327050589908
111.5632
112.0000
12.2180
180
1008
1
16881.3301
182.6344
G
130.6594
16992.3301
3723.0000
20153.0215
166
14.5381488800049
130.050596685022
111.1583
111.0000
12.7004
124
1009
1
670.3372
7.2522
G
6.0187
780.3372
894.0000
354.0041
86
10.4641580581665
129.651501811611
109.8901
110.0000
13.1010
188
1010
1
954.9425
10.3313
G
8.3667
1062.9425
1268.0000
588.5971
87
10.5248203277588
127.043803927956
109.1538
108.0000
12.6959
188
1011
1
94.8732
1.0264
G
1.5709
205.8732
205.0000
37.9748
71
9.50789165496826
131.058419535544
110.4000
111.0000
13.3723
186
1012
1
66.0781
0.7149
G
1.3664
175.0781
176.0000
22.2446
64
9.02703380584717
128.134109573875
109.4286
109.0000
12.7561
188
1013
1
73.3636
0.7937
G
1.3941
183.3636
184.0000
26.7483
66
9.16699600219727
131.530968658895
109.2802
110.0000
14.3540
188
1014
1
57.4462
0.6215
G
1.2910
167.4462
166.0000
26.4133
65
9.09728336334229
129.700397317312
110.4835
110.0000
13.1336
188
1015
1
15811.9814
171.0654
G
119.4547
15925.9814
3468.0000
19169.1855
160
14.2729930877686
133.322320700356
114.9231
114.0000
12.8815
121
1016
1
83.6406
0.9049
G
1.4235
196.6406
199.0000
27.6667
64
9.02703380584717
138.140825764251
114.0331
113.0000
16.7605
187
1017
1
36.2407
0.3921
G
1.1376
148.2407
146.0000
22.9096
54
8.29185962677002
130.31175791231
111.1703
112.0000
12.2078
188
1018
1
14.1613
0.1532
L
0.9387
131.1613
136.0000
18.7188
31
6.2825493812561
139.73035989825
117.3452
117.0000
15.1536
174
1019
1
30.5192
0.3302
G
1.0538
147.5192
143.0000
30.7812
52
8.1368579864502
139.991569832489
118.0471
117.0000
15.3277
176
1020
1
42.2364
0.4569
G
1.1212
152.2364
150.0000
17.5737
55
8.36828422546387
135.78179495282
113.0165
110.0000
17.1879
188
Total number of rows:
54359
Table truncated, full table size
6761 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128938.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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