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GEO accession:
Sample GSM1293664
Query DataSets for GSM1293664
Status
Public on Dec 19, 2013
Title
MadMA357
Sample type
genomic
Source name
Saliva
Organism
Homo sapiens
Characteristics
gender: M
sample type: Saliva
population: Temoro (Antemoro)
region: Madagascar
Extracted molecule
genomic DNA
Extraction protocol
Extraction of genomic DNA from saliva was performed using standard extraction protocols.
Label
Cy3, Cy5
Label protocol
Followed Illumina standard protocol
Hybridization protocol
Followed Illumina standard protocol
Scan protocol
Followed Illumina standard protocol
Description
640
Genomic DNA extracted from saliva was genotyped using OmniExpress 720K Bead Chip (Illumina).
Data processing
Image data was analyzed using Genomestudio v2011.1 with GT module 1.9.4 (Illumina).
Submission date
Dec 18, 2013
Last update date
Dec 19, 2013
Contact name
Luca Pagani
E-mail(s)
lp.lucapagani@gmail.com
Organization name
University of Cambridge
Department
Biological Anthropology
Lab
Mega
Street address
Henry Wellcome Building, Fitzwilliam Street
City
Cambridge
State/province
UK
ZIP/Postal code
CB2 1QH
Country
United Kingdom
Platform ID
GPL13135
Series (2)
GSE53445
Genome wide evidence of Austronesian-Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar
GSE152200
Aborigines of Taiwan and their genetic relationship to East Asian and Pacific populations
Data table header descriptions
ID_REF
VALUE
Genotype: AA,AB,BB,or NC (no call)
Data table
ID_REF
VALUE
rs1000000
BB
rs1000002
BB
rs10000023
AB
rs1000003
AB
rs10000030
BB
rs10000037
BB
rs10000041
AB
rs10000042
BB
rs10000049
AB
rs1000007
BB
rs10000073
AA
rs10000081
AB
rs10000092
AB
rs10000105
BB
rs10000119
AB
rs10000124
BB
rs10000147
AA
rs10000154
AB
rs1000016
AB
rs10000160
BB
Total number of rows:
731442
Table truncated, full table size
9419 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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