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Sample GSM1338304 Query DataSets for GSM1338304
Status Public on Mar 01, 2015
Title MDA-MB-468_siPRKCD_rep3
Sample type RNA
 
Source name MDA-mB-468 cells treated with siPRKCD
Organism Homo sapiens
Characteristics cell line: MDA-mB-468 breast cancer cell line
treatment: siPRKCD
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Scan setting file: Direct Hyb
Description Sample name: 468d3.a1.lbe1
Data processing The data were normalized using quantile normalization with BASE
 
Submission date Mar 03, 2014
Last update date Mar 01, 2015
Contact name Christer Larsson
E-mail(s) christer.larsson@med.lu.se
Organization name Lund university
Department Laboratory Medicine
Lab Translational Cancer Research
Street address Medicon Village, Bldg 404:C3
City Lund
ZIP/Postal code 223 81
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE55503 Effects of siRNA targeting PRKCD in breast cancer cells

Data table header descriptions
ID_REF
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 141.5624 0
ILMN_2055271 120.508 0.01038961
ILMN_1736007 101.3742 0.3246753
ILMN_2383229 97.3698 0.5922078
ILMN_1806310 99.06859 0.4545455
ILMN_1779670 98.6847 0.487013
ILMN_1653355 100.991 0.3519481
ILMN_1717783 96.2824 0.6649351
ILMN_1705025 96.88986 0.6324675
ILMN_1814316 91.80378 0.912987
ILMN_2359168 107.8124 0.08441558
ILMN_1731507 81.86296 1
ILMN_1787689 100.2193 0.3987013
ILMN_3241953 233.8094 0
ILMN_1745607 110.9053 0.05714286
ILMN_2136495 92.39474 0.8844156
ILMN_1668111 97.29703 0.6
ILMN_2295559 108.1782 0.08051948
ILMN_1735045 152.0371 0
ILMN_1680754 99.85443 0.4233766

Total number of rows: 47323

Table truncated, full table size 1371 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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