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Sample GSM13596 Query DataSets for GSM13596
Status Public on Feb 12, 2004
Title KM109_t=10
Sample type RNA
 
Channel 1
Source name KM109_t=10
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name cDNA reference
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Healthy primary skeletal muscle cells ten days after initiation of fusion (t=10)
 
Submission date Dec 11, 2003
Last update date Nov 22, 2005
Contact name Ellen Sterrenburg
E-mail(s) E.sterrenburg@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab Center for Human and Clinical Genetics
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL781
Series (2)
GSE884 KM109
GSE906 Skeletal muscle cell fusion time course

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
Dia. Diameter of the spot
F1 Median Intensity target sample
F1 Mean Mean signal intensity target sample
F1 SD Standard deviation of the intensity
B1 Median Median background of target sample
B1 Mean Mean background of target sample
B1 SD Standard deviation of the background
% > B1+1SD Percentage of pixels that have a higher intensity than the background plus 1 SD
% > B1+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F1 % Sat. Percentage saturated pixels
F2 Median Median Signal intensity reference sample
F2 Mean Intensity reference sample
F2 SD Standard deviation of the intensity
B2 Median Background of reference sample
B2 Mean Background of reference sample
B2 SD Deviation of the background
% > B2+1SD Background plus 1 SD
% > B2+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F2 % Sat. Percentage saturated pixels
Ratio of Medians Ratio of median intensities
Ratio of Means Ratio of mean intensities
Median of Ratios Mediam of ratios
Mean of Ratios Mean of ratios
Ratios SD Standard deviation
Rgn Ratio Regression ratio is determined by computing a linear regression between the population of pixels represented by wavelength 1 and wavelength 2
Rgn Rē Coefficient of determination provides a measure of the level of accuracy of the fit of the linear regression curve
F Pixels Number of pixels in the foreground
B Pixels Number of pixels in the background
Sum of Medians Sum of medians
Sum of Means Sum of means
Log Ratio Log ratio
F1 Median - B1 Median intensity of target minus the local background
F2 Median - B2 Median intensity of the reference sample minus the local background
F1 Mean - B1 Mean intensity of target minus the local background
F2 Mean - B2 Mean intensity of the reference sample minus the local background
Flags Negative number means the spot is bad or not found
UNF_VALUE Background corrected intensity of the target sample normalized by VSN

Data table
ID_REF VALUE Dia. F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD % > B1+1SD % > B1+2SD F1 % Sat. F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD % > B2+1SD % > B2+2SD F2 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn Rē F Pixels B Pixels Sum of Medians Sum of Means Log Ratio F1 Median - B1 F2 Median - B2 F1 Mean - B1 F2 Mean - B2 Flags UNF_VALUE
1 180 599 591 77 637 659 134 0 0 0 263 262 23 276 280 34 0 0 0 2.923 3.286 3.2 3.028 3.507 5.274 0.414 256 1473 -51 -60 1.547 -38 -13 -46 -14 -50 0.516104794
2 1.156503247 130 735 769 170 642 651 116 45 19 0 980 960 148 280 282 29 100 99 0 0.133 0.187 0.206 0.179 2.425 0.254 0.157 120 711 793 807 -2.912 93 700 127 680 0 1.156503247
3 180 652 694 192 654 662 113 19 11 0 353 355 67 287 288 29 69 52 0 -0.03 0.588 1.989 1.803 4.044 6.301 0.15 256 1232 64 108 Error -2 66 40 68 -50 0.720651825
4 180 575 580 91 637 644 101 4 0 0 341 348 56 305 311 52 42 11 0 -1.722 -1.326 2.382 1.789 4.733 11.179 0.03 256 1406 -26 -14 Error -62 36 -57 43 -50 0.367436614
5 2.17910319 120 1147 1150 139 624 630 94 99 99 0 2255 2243 277 322 323 32 100 100 0 0.271 0.274 0.268 0.27 1.226 0.275 0.823 120 745 2456 2447 -1.886 523 1933 526 1921 0 2.17910319
6 1.140795779 120 743 742 82 654 699 193 9 0 0 1218 1230 156 329 337 44 100 100 0 0.1 0.098 0.115 0.099 1.959 0.114 0.118 120 692 978 989 -3.32 89 889 88 901 0 1.140795779
7 1.533391969 140 869 919 231 662 688 163 59 26 0 891 820 235 323 328 41 98 90 0 0.364 0.517 0.374 0.49 3.31 1.3 0.112 156 1000 775 754 -1.456 207 568 257 497 0 1.533391969
8 1.209931694 120 734 728 81 627 639 104 52 8 0 1262 1255 207 292 295 31 100 100 0 0.11 0.105 0.121 0.102 2.135 0.132 0.184 120 756 1077 1064 -3.18 107 970 101 963 0 1.209931694
9 180 666 689 141 641 667 135 19 7 0 409 414 127 281 285 35 68 57 0 0.195 0.361 0.87 1.019 5.248 2.966 0.084 256 1513 153 181 -2.356 25 128 48 133 -50 0.859050974
10 2.962196366 130 1950 2089 483 652 685 237 100 100 0 3185 3443 968 287 295 74 100 100 0 0.448 0.455 0.453 0.452 1.153 0.466 0.867 120 779 4196 4593 -1.159 1298 2898 1437 3156 0 2.962196366
11 180 641 663 135 661 680 134 11 7 0 357 366 83 285 291 68 51 26 0 -0.278 0.025 1.715 1.568 4.793 4.812 0.065 256 1397 52 83 Error -20 72 2 81 -50 0.621254992
12 180 611 610 79 681 693 132 0 0 0 382 369 93 286 290 63 53 44 0 -0.729 -0.855 2.478 1.787 5.375 0.042 0.001 256 1303 26 12 Error -70 96 -71 83 -50 0.315956213
13 180 664 661 111 665 669 108 13 2 0 351 351 62 281 282 26 68 52 0 -0.014 -0.057 1.361 1.143 4.883 7.46 0.057 256 1319 69 66 Error -1 70 -4 70 -50 0.726004547
14 180 648 636 91 688 687 102 4 0 0 325 329 62 275 276 26 58 49 0 -0.8 -0.963 2.276 1.735 4.625 9.119 0.043 256 1306 10 2 Error -40 50 -52 54 -50 0.504073986
15 180 647 629 89 686 695 122 1 0 0 319 325 56 277 281 29 53 44 0 -0.929 -1.188 2.468 1.886 7.252 15.922 0.012 256 1403 3 -9 Error -39 42 -57 48 -50 0.510097894
16 1.998112729 120 1078 1062 129 664 663 100 96 94 0 2216 2135 296 279 280 27 100 100 0 0.214 0.214 0.22 0.206 1.4 0.223 0.754 120 741 2351 2254 -2.226 414 1937 398 1856 0 1.998112729
17 0.998658209 120 742 743 121 687 690 119 26 9 0 824 806 164 281 289 137 100 92 0 0.101 0.107 0.201 0.171 2.592 0.165 0.084 120 750 598 581 -3.303 55 543 56 525 0 0.998658209
18 180 656 646 95 662 673 131 3 0 0 313 334 67 272 277 96 34 1 0 -0.146 -0.258 1.37 1.231 5.22 1.422 0.086 256 1637 35 46 Error -6 41 -16 62 -50 0.699063281
19 180 556 582 128 583 597 101 14 6 0 324 332 68 273 275 32 55 45 0 -0.529 -0.017 2.759 1.9 5.191 10.423 0.034 256 1293 24 58 Error -27 51 -1 59 -50 0.581040109
20 180 558 559 78 617 632 122 0 0 0 346 340 62 283 285 29 61 51 0 -0.937 -1.018 2.437 1.507 5.159 9.096 0.048 256 1087 4 -1 Error -59 63 -58 57 -50 0.386510322

Total number of rows: 15552

Table truncated, full table size 2776 Kbytes.




Supplementary data files not provided
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