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Sample GSM13597 Query DataSets for GSM13597
Status Public on Feb 12, 2004
Title KM109_t=14
Sample type RNA
 
Channel 1
Source name KM109_t=14
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name cDNA reference
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Healthy primary skeletal muscle cells fourteen days after initiation of fusion (t=14)
 
Submission date Dec 11, 2003
Last update date Nov 22, 2005
Contact name Ellen Sterrenburg
E-mail(s) E.sterrenburg@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab Center for Human and Clinical Genetics
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL781
Series (2)
GSE884 KM109
GSE906 Skeletal muscle cell fusion time course

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
Dia. Diameter of the spot
F1 Median Intensity target sample
F1 Mean Mean signal intensity target sample
F1 SD Standard deviation of the intensity
B1 Median Median background of target sample
B1 Mean Mean background of target sample
B1 SD Standard deviation of the background
% > B1+1SD Percentage of pixels that have a higher intensity than the background plus 1 SD
% > B1+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F1 % Sat. Percentage saturated pixels
F2 Median Median Signal intensity reference sample
F2 Mean Intensity reference sample
F2 SD Standard deviation of the intensity
B2 Median Background of reference sample
B2 Mean Background of reference sample
B2 SD Deviation of the background
% > B2+1SD Background plus 1 SD
% > B2+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F2 % Sat. Percentage saturated pixels
Ratio of Medians Ratio of median intensities
Ratio of Means Ratio of mean intensities
Median of Ratios Mediam of ratios
Mean of Ratios Mean of ratios
Ratios SD Standard deviation
Rgn Ratio Regression ratio is determined by computing a linear regression between the population of pixels represented by wavelength 1 and wavelength 2
Rgn Rē Coefficient of determination provides a measure of the level of accuracy of the fit of the linear regression curve
F Pixels Number of pixels in the foreground
B Pixels Number of pixels in the background
Sum of Medians Sum of medians
Sum of Means Sum of means
Log Ratio Log ratio
F1 Median - B1 Median intensity of target minus the local background
F2 Median - B2 Median intensity of the reference sample minus the local background
F1 Mean - B1 Mean intensity of target minus the local background
F2 Mean - B2 Mean intensity of the reference sample minus the local background
Flags Negative number means the spot is bad or not found
UNF_VALUE Background corrected intensity of the target sample normalized by VSN

Data table
ID_REF VALUE Dia. F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD % > B1+1SD % > B1+2SD F1 % Sat. F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD % > B2+1SD % > B2+2SD F2 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn Rē F Pixels B Pixels Sum of Medians Sum of Means Log Ratio F1 Median - B1 F2 Median - B2 F1 Mean - B1 F2 Mean - B2 Flags UNF_VALUE
1 180 567 564 58 559 562 61 12 2 0 376 393 120 369 376 62 8 3 0 1.143 0.208 1.5 1.44 3.816 0.403 0.09 256 1463 15 29 0.193 8 7 5 24 -50 0.804724097
2 1.381512588 120 688 740 191 551 548 53 88 65 0 1325 1315 267 363 363 33 100 99 0 0.142 0.199 0.15 0.152 2.312 0.219 0.446 120 630 1099 1141 -2.812 137 962 189 952 0 1.381512588
3 180 551 551 66 563 588 805 0 0 0 426 447 131 371 439 1408 0 0 0 -0.218 -0.158 0.682 0.666 4.314 0.355 0.039 256 1269 43 64 Error -12 55 -12 76 -50 0.688324573
4 180 505 506 47 546 577 772 0 0 0 421 423 71 363 428 1351 0 0 0 -0.707 -0.667 1 0.891 5.575 0.16 0.004 256 1382 17 20 Error -41 58 -40 60 -50 0.50418823
5 2.874590524 130 1590 1578 201 527 529 48 100 100 0 2771 2723 274 366 369 31 100 100 0 0.442 0.446 0.447 0.435 1.284 0.454 0.888 120 823 3468 3408 -1.178 1063 2405 1051 2357 0 2.874590524
6 1.835212793 120 835 826 69 540 548 79 96 95 0 1432 1431 162 384 393 113 100 100 0 0.281 0.273 0.275 0.264 1.388 0.274 0.821 120 788 1343 1333 -1.829 295 1048 286 1047 0 1.835212793
7 1.999550012 120 914 904 120 543 546 49 100 96 0 1454 1426 259 395 397 37 100 100 0 0.35 0.35 0.355 0.336 1.38 0.344 0.866 120 798 1430 1392 -1.513 371 1059 361 1031 0 1.999550012
8 1.711141979 120 775 765 75 530 535 46 98 95 0 1967 1926 366 399 402 34 100 100 0 0.156 0.154 0.153 0.148 1.4 0.152 0.804 120 792 1813 1762 -2.678 245 1568 235 1527 0 1.711141979
9 1.323164378 130 664 668 87 543 546 47 80 62 0 737 739 100 403 404 30 100 100 0 0.362 0.372 0.37 0.336 1.984 0.437 0.533 120 884 455 461 -1.465 121 334 125 336 0 1.323164378
10 3.402771269 130 2494 2595 597 610 611 58 100 100 0 4531 4706 952 420 424 54 100 100 0 0.458 0.463 0.458 0.453 1.257 0.457 0.873 120 859 5995 6271 -1.126 1884 4111 1985 4286 0 3.402771269
11 180 654 654 52 638 641 60 14 3 0 538 574 137 444 449 78 53 36 0 0.17 0.123 0.325 0.482 5.182 0.172 0.112 256 1416 110 146 -2.555 16 94 16 130 -50 0.848915114
12 180 563 566 68 591 597 62 8 3 0 550 534 96 432 438 75 57 41 0 -0.237 -0.245 0.973 0.825 5.241 0.048 0.001 256 1334 90 77 Error -28 118 -25 102 -50 0.58897098
13 180 545 540 50 574 573 48 5 0 0 491 497 74 427 429 43 58 41 0 -0.453 -0.486 0.8 0.829 4.523 3.827 0.016 256 1334 35 36 Error -29 64 -34 70 -50 0.582577022
14 180 546 546 50 575 575 52 5 0 0 485 498 70 436 439 43 52 39 0 -0.592 -0.468 1.258 0.986 4.749 1.67 0.025 256 1306 20 33 Error -29 49 -29 62 -50 0.582577022
15 180 526 525 49 568 570 53 1 0 0 469 479 63 441 445 39 43 30 0 -1.5 -1.132 1.356 1.375 3.369 0.335 0.005 256 1403 -14 -5 Error -42 28 -43 38 -50 0.497519619
16 2.144873066 120 997 1008 118 548 551 51 100 100 0 3917 3837 577 458 464 45 100 100 0 0.13 0.136 0.128 0.135 1.342 0.132 0.84 120 741 3908 3839 -2.946 449 3459 460 3379 0 2.144873066
17 0.9886274 120 568 572 65 525 526 39 50 26 0 1222 1192 276 448 452 43 100 100 0 0.056 0.063 0.088 0.073 2.064 0.079 0.254 120 732 817 791 -4.17 43 774 47 744 0 0.9886274
18 180 485 486 48 514 515 43 7 0 0 450 474 78 420 424 38 48 41 0 -0.967 -0.519 1.023 0.864 4.329 1.549 0.037 256 1628 1 26 Error -29 30 -28 54 -50 0.582577022
19 180 538 545 67 559 561 56 8 0 0 413 435 87 362 371 64 46 26 0 -0.412 -0.192 0.552 0.668 4.845 0.338 0.04 256 1296 30 59 Error -21 51 -14 73 -50 0.633123075
20 180 525 533 66 550 552 58 8 0 0 436 446 160 361 367 55 54 39 0 -0.333 -0.2 0.659 0.729 4.751 0.277 0.077 256 1057 50 68 Error -25 75 -17 85 -50 0.60802334

Total number of rows: 15552

Table truncated, full table size 2770 Kbytes.




Supplementary data files not provided
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