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Sample GSM13649 Query DataSets for GSM13649
Status Public on Feb 12, 2004
Title KM108_t=1
Sample type RNA
 
Channel 1
Source name KM108_t=1
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name cDNA reference
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Healthy primairy skeletal muscle cells (KM108) one day after serum initiation (t=1)
 
Submission date Dec 12, 2003
Last update date Nov 22, 2005
Contact name Ellen Sterrenburg
E-mail(s) E.sterrenburg@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab Center for Human and Clinical Genetics
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL781
Series (2)
GSE895 KM108_cDNA
GSE906 Skeletal muscle cell fusion time course

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
Dia. Diameter of the spot
F1 Median Intensity target sample
F1 Mean Mean signal intensity target sample
F1 SD Standard deviation of the intensity
B1 Median Median background of target sample
B1 Mean Mean background of target sample
B1 SD Standard deviation of the background
% > B1+1SD Percentage of pixels that have a higher intensity than the background plus 1 SD
% > B1+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F1 % Sat. Percentage saturated pixels
F2 Median Median Signal intensity reference sample
F2 Mean Intensity reference sample
F2 SD Standard deviation of the intensity
B2 Median Background of reference sample
B2 Mean Background of reference sample
B2 SD Deviation of the background
% > B2+1SD Background plus 1 SD
% > B2+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F2 % Sat. Percentage saturated pixels
Ratio of Medians Ratio of median intensities
Ratio of Means Ratio of mean intensities
Median of Ratios Mediam of ratios
Mean of Ratios Mean of ratios
Ratios SD Standard deviation
Rgn Ratio Regression ratio is determined by computing a linear regression between the population of pixels represented by wavelength 1 and wavelength 2
Rgn Rē Coefficient of determination provides a measure of the level of accuracy of the fit of the linear regression curve
F Pixels Number of pixels in the foreground
B Pixels Number of pixels in the background
Sum of Medians Sum of medians
Sum of Means Sum of means
Log Ratio Log ratio
F1 Median - B1 Median intensity of target minus the local background
F2 Median - B2 Median intensity of the reference sample minus the local background
F1 Mean - B1 Mean intensity of target minus the local background
F2 Mean - B2 Mean intensity of the reference sample minus the local background
Flags Negative number means the spot is bad or not found
UNF_VALUE Background corrected intensity of the target sample normalized by VSN

Data table
ID_REF VALUE Dia. F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD % > B1+1SD % > B1+2SD F1 % Sat. F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD % > B2+1SD % > B2+2SD F2 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn Rē F Pixels B Pixels Sum of Medians Sum of Means Log Ratio F1 Median - B1 F2 Median - B2 F1 Mean - B1 F2 Mean - B2 Flags UNF_VALUE
1 180 419 418 29 454 491 120 0 0 0 418 423 48 423 434 65 9 1 0 7 100000 1.333 1.262 3.995 2.443 0.107 256 1454 -40 -36 2.807 -35 -5 -36 0 -50 0.447787239
2 1.077476754 140 599 667 284 446 450 43 98 88 0 995 1129 445 414 418 44 100 100 0 0.263 0.309 0.275 0.26 1.632 0.397 0.68 156 809 734 936 -1.925 153 581 221 715 0 1.077476754
3 0.98762159 150 586 616 119 465 471 49 83 59 0 581 601 99 416 417 51 93 83 0 0.733 0.816 0.824 0.713 2.431 1.085 0.456 156 839 286 336 -0.447 121 165 151 185 0 0.98762159
4 180 462 465 35 495 505 62 1 0 0 481 482 53 428 428 51 52 20 0 -0.623 -0.556 0.824 0.775 5.614 0.833 0.069 256 1336 20 24 Error -33 53 -30 54 -50 0.455839556
5 3.251003133 160 3277 3185 843 516 538 107 99 99 0 3593 3508 958 424 434 57 100 99 0 0.871 0.865 0.855 0.875 1.456 0.866 0.94 208 963 5930 5753 -0.199 2761 3169 2669 3084 0 3.251003133
6 1.623236098 160 886 882 109 477 543 174 95 76 0 1518 1506 164 425 450 93 100 100 0 0.374 0.375 0.377 0.355 1.43 0.385 0.861 208 1029 1502 1486 -1.418 409 1093 405 1081 0 1.623236098
7 1.098985733 160 623 653 127 462 467 60 94 74 0 979 1021 225 428 432 42 99 99 0 0.292 0.322 0.303 0.285 1.636 0.354 0.811 208 1085 712 784 -1.775 161 551 191 593 0 1.098985733
8 1.60793978 160 881 872 96 481 487 46 99 99 0 1301 1298 152 438 444 44 100 100 0 0.463 0.455 0.452 0.448 1.264 0.443 0.866 208 1094 1263 1251 -1.109 400 863 391 860 0 1.60793978
9 0.797748309 160 561 562 52 501 506 48 57 21 0 639 642 58 451 461 61 99 88 0 0.319 0.319 0.336 0.309 2.073 0.373 0.326 208 1094 248 252 -1.648 60 188 61 191 0 0.797748309
10 4.104450895 170 7205 7303 1366 527 544 72 100 100 0 7620 7550 1227 486 500 71 100 100 0 0.936 0.959 0.937 0.954 1.185 0.97 0.937 208 1119 13812 13840 -0.095 6678 7134 6776 7064 0 4.104450895
11 180 520 522 46 507 524 71 10 1 0 528 527 59 445 462 76 56 7 0 0.157 0.183 0.423 0.417 3.908 0.491 0.19 256 1290 96 97 -2.675 13 83 15 82 -50 0.633077864
12 180 470 477 56 494 497 42 9 1 0 532 520 57 419 420 37 85 74 0 -0.212 -0.168 0.315 0.316 5.664 5.304 0.017 256 1253 89 84 Error -24 113 -17 101 -50 0.491730567
13 180 477 483 51 497 500 39 11 4 0 478 486 51 423 423 36 70 31 0 -0.364 -0.222 0.475 0.524 4.183 0.217 0.009 256 1245 35 49 Error -20 55 -14 63 -50 0.507497836
14 180 502 501 51 493 495 44 21 4 0 482 488 59 431 434 51 48 24 0 0.176 0.14 0.534 0.516 3.731 0.326 0.027 256 1253 60 65 -2.503 9 51 8 57 -50 0.618291403
15 180 477 488 72 524 525 64 10 0 0 503 504 57 471 485 126 7 0 0 -1.469 -1.091 0.979 1.239 4.457 0.359 0.042 256 1296 -15 -3 Error -47 32 -36 33 -50 0.398908659
16 2.714547073 160 2105 2116 267 553 554 55 100 100 0 3419 3432 557 471 479 74 100 100 0 0.526 0.528 0.522 0.531 1.183 0.518 0.963 208 1082 4500 4524 -0.926 1552 2948 1563 2961 0 2.714547073
17 0.872373425 160 619 611 48 536 543 52 69 25 0 838 837 108 439 446 59 100 99 0 0.208 0.188 0.201 0.177 1.861 0.202 0.39 208 1056 482 473 -2.265 83 399 75 398 0 0.872373425
18 180 523 525 43 534 541 52 7 1 0 522 513 56 431 436 53 71 33 0 -0.121 -0.11 0.303 0.362 4.25 0.651 0.147 256 1506 80 73 Error -11 91 -9 82 -50 0.54255006
19 180 451 462 49 458 470 73 9 1 0 512 514 74 427 440 68 60 23 0 -0.082 0.046 0.371 0.404 3.469 0.648 0.403 256 1212 78 91 Error -7 85 4 87 -50 0.557937671
20 180 461 466 44 480 498 72 2 1 0 504 495 53 423 430 51 71 33 0 -0.235 -0.194 0.29 0.286 3.296 1.283 0.044 256 918 62 58 Error -19 81 -14 72 -50 0.51142166

Total number of rows: 15552

Table truncated, full table size 2826 Kbytes.




Supplementary data files not provided

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