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Sample GSM13655 Query DataSets for GSM13655
Status Public on Feb 12, 2004
Title KM108_t=21
Sample type RNA
 
Channel 1
Source name KM108_t=21
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name cDNA reference
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Healthy primairy skeletal muscle cells (KM108) twenty one days after initiation of fusion (t=21)
 
Submission date Dec 12, 2003
Last update date Nov 22, 2005
Contact name Ellen Sterrenburg
E-mail(s) E.sterrenburg@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab Center for Human and Clinical Genetics
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL781
Series (2)
GSE895 KM108_cDNA
GSE906 Skeletal muscle cell fusion time course

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
Dia. Diameter of the spot
F1 Median Intensity target sample
F1 Mean Mean signal intensity target sample
F1 SD Standard deviation of the intensity
B1 Median Median background of target sample
B1 Mean Mean background of target sample
B1 SD Standard deviation of the background
% > B1+1SD Percentage of pixels that have a higher intensity than the background plus 1 SD
% > B1+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F1 % Sat. Percentage saturated pixels
F2 Median Median Signal intensity reference sample
F2 Mean Intensity reference sample
F2 SD Standard deviation of the intensity
B2 Median Background of reference sample
B2 Mean Background of reference sample
B2 SD Deviation of the background
% > B2+1SD Background plus 1 SD
% > B2+2SD Percentage of pixels that is higher than the backgound plus 2 SD
F2 % Sat. Percentage saturated pixels
Ratio of Medians Ratio of median intensities
Ratio of Means Ratio of mean intensities
Median of Ratios Mediam of ratios
Mean of Ratios Mean of ratios
Ratios SD Standard deviation
Rgn Ratio Regression ratio is determined by computing a linear regression between the population of pixels represented by wavelength 1 and wavelength 2
Rgn Rē Coefficient of determination provides a measure of the level of accuracy of the fit of the linear regression curve
F Pixels Number of pixels in the foreground
B Pixels Number of pixels in the background
Sum of Medians Sum of medians
Sum of Means Sum of means
Log Ratio Log ratio
F1 Median - B1 Median intensity of target minus the local background
F2 Median - B2 Median intensity of the reference sample minus the local background
F1 Mean - B1 Mean intensity of target minus the local background
F2 Mean - B2 Mean intensity of the reference sample minus the local background
Flags Negative number means the spot is bad or not found
UNF_VALUE Background corrected intensity of the target sample normalized by VSN

Data table
ID_REF VALUE Dia. F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD % > B1+1SD % > B1+2SD F1 % Sat. F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD % > B2+1SD % > B2+2SD F2 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn Rē F Pixels B Pixels Sum of Medians Sum of Means Log Ratio F1 Median - B1 F2 Median - B2 F1 Mean - B1 F2 Mean - B2 Flags UNF_VALUE
1 180 1030 1043 105 1046 1074 175 4 0 0 657 659 81 637 638 66 26 8 0 -0.8 -0.136 1.316 1.393 4.104 3.842 0.308 256 1454 4 19 Error -16 20 -3 22 -50 0.632500126
2 1.095541157 140 1195 1224 168 1050 1098 233 28 6 0 1245 1364 418 644 650 74 97 97 0 0.241 0.242 0.267 0.245 2.251 0.306 0.305 156 781 746 894 -2.051 145 601 174 720 0 1.095541157
3 180 1079 1124 226 1113 1149 224 12 3 0 738 746 105 642 650 82 55 23 0 -0.354 0.106 1.422 1.207 4.427 3.629 0.355 256 1193 62 115 Error -34 96 11 104 -50 0.571012076
4 180 1122 1147 160 1137 1160 180 12 3 0 785 785 80 665 671 79 70 33 0 -0.125 0.083 1.064 1.058 4.013 3.408 0.263 256 1179 105 130 Error -15 120 10 120 -50 0.635856317
5 3.922243275 160 7202 7014 1478 1157 1181 149 100 100 0 4292 4044 1103 709 713 65 99 98 0 1.687 1.756 1.687 1.919 1.723 1.748 0.93 208 986 9628 9192 0.755 6045 3583 5857 3335 0 3.922243275
6 1.919363568 160 1789 1782 195 1149 1166 127 97 96 0 2210 2203 259 676 679 59 100 100 0 0.417 0.415 0.42 0.402 1.374 0.429 0.841 208 1058 2174 2160 -1.261 640 1534 633 1527 0 1.919363568
7 1.705768963 170 1613 1700 643 1139 1169 147 95 81 0 1466 1506 534 650 658 59 96 93 0 0.581 0.655 0.572 0.632 1.87 0.85 0.68 208 1223 1290 1417 -0.784 474 816 561 856 0 1.705768963
8 1.537948515 150 1486 1495 123 1121 1152 144 97 76 0 2131 2136 170 651 656 62 100 100 0 0.247 0.252 0.255 0.238 1.406 0.247 0.552 156 927 1845 1859 -2.02 365 1480 374 1485 0 1.537948515
9 180 1283 1280 136 1161 1192 170 35 3 0 899 876 100 658 658 73 87 80 0 0.506 0.546 0.653 0.638 2.295 1.422 0.366 256 1333 363 337 -0.982 122 241 119 218 -50 1.038174774
10 3.84349283 160 6812 6873 1478 1239 1256 191 100 100 0 8059 7736 1798 690 702 105 100 99 0 0.756 0.8 0.762 0.824 1.636 0.794 0.905 208 1055 12942 12680 -0.403 5573 7369 5634 7046 0 3.84349283
11 180 1197 1252 235 1221 1239 175 17 8 0 790 802 134 677 693 91 61 22 0 -0.212 0.248 1.351 1.108 3.561 2.746 0.283 256 1312 89 156 Error -24 113 31 125 -50 0.605423432
12 180 1194 1232 226 1214 1230 149 11 7 0 764 754 133 661 666 60 57 44 0 -0.194 0.194 1.321 1.056 3.748 2.71 0.25 256 1243 83 111 Error -20 103 18 93 -50 0.61901222
13 180 1150 1151 117 1220 1236 154 3 0 0 715 705 96 656 655 68 44 16 0 -1.186 -1.408 1.393 1.141 4.432 2.676 0.175 256 1247 -11 -20 Error -70 59 -69 49 -50 0.442067729
14 180 1238 1258 177 1223 1250 167 17 4 0 741 741 92 657 663 82 50 15 0 0.179 0.417 1.201 1.279 3.836 3.657 0.276 256 1258 99 119 -2.485 15 84 35 84 -50 0.733604175
15 180 1196 1219 132 1250 1276 179 7 0 0 773 763 90 673 689 93 52 13 0 -0.54 -0.344 1.076 1.11 4.177 2.683 0.285 256 1274 46 59 Error -54 100 -31 90 -50 0.500333831
16 2.50739919 160 2582 2533 435 1261 1279 161 99 96 0 4216 4170 1263 682 696 101 100 100 0 0.374 0.365 0.378 0.367 1.58 0.345 0.863 208 1133 4855 4760 -1.42 1321 3534 1272 3488 0 2.50739919
17 1.004577166 110 1351 1505 404 1242 1264 162 43 35 0 1090 1119 126 675 718 153 100 90 0 0.263 0.592 0.766 0.523 3.3 1.114 0.198 80 613 524 707 -1.929 109 415 263 444 0 1.004577166
18 180 1261 1273 122 1232 1262 193 10 0 0 802 790 96 664 711 329 1 0 0 0.21 0.325 0.79 0.709 3.227 0.284 0.235 256 1622 167 167 -2.251 29 138 41 126 -50 0.777286882
19 180 1077 1072 109 1001 1042 223 7 0 0 758 746 85 624 633 83 68 31 0 0.567 0.582 0.756 0.81 3.291 3.393 0.224 256 1203 210 193 -0.818 76 134 71 122 -50 0.915251665
20 180 1040 1074 330 1076 1114 185 16 9 0 752 769 151 661 669 73 54 34 0 -0.396 -0.019 1.438 1.34 4.296 3.04 0.35 256 946 55 106 Error -36 91 -2 108 -50 0.564054892

Total number of rows: 15552

Table truncated, full table size 2857 Kbytes.




Supplementary data files not provided
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