|
| Status |
Public on Apr 12, 2014 |
| Title |
male_1 |
| Sample type |
SRA |
| |
|
| Source name |
whole
|
| Organism |
Caligus rogercresseyi |
| Characteristics |
tissue: whole
age: adult
genotype: wild type
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA from pooled samples from farmed Atlantic salmon was extracted by mixer-mill (Retsch) homogenization in Trizol (Invitrogen), followed by column clean-up using the RNeasy kit (QIAGEN)
RNA libraries were prepared for sequencing using standard Illumina protocols.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Male
|
| Data processing |
Please refer to TSA: GAZX00000000.1 (http://www.ncbi.nlm.nih.gov/nuccore/604768531)
Fragments Per Kilobase of exon per Megabase of library size (FPKM) were calculated using CLC Genomics Workbench v6.5
Genome_build: GAZX00000000.1
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample
|
| |
|
| Submission date |
Apr 11, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ben F Koop |
| E-mail(s) |
bkoop@uvic.ca
|
| Phone |
(250) 472-4067
|
| Organization name |
The University of Victoria
|
| Department |
Biology
|
| Lab |
Centre for Biomedical Research
|
| Street address |
PO Box 3020 STN CSC
|
| City |
Victoria |
| State/province |
BC |
| ZIP/Postal code |
V8W 3N5 |
| Country |
Canada |
| |
|
| Platform ID |
GPL18563 |
| Series (1) |
| GSE56725 |
Caligus rogercresseyi transcriptome |
|
| Relations |
| BioSample |
SAMN02725398 |
| SRA |
SRX515005 |
