|
Status |
Public on Oct 01, 2014 |
Title |
131B_INV |
Sample type |
genomic |
|
|
Source name |
microdissected ovarian tumor
|
Organism |
Homo sapiens |
Characteristics |
disease state: LGSC component: Invasive
|
Treatment protocol |
NA
|
Growth protocol |
NA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Total genomic DNA was extracted using a DNeasy Kit (Qiagen, Valencia, CA)
|
Label |
Cy3,Cy5
|
Label protocol |
Infinium HD Assay was performed according to the manufacturer's instructions (Illumina)
|
|
|
Hybridization protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
Scan protocol |
Infinium HD Assay was performed using the BeadArray system according to the manufacturer's instructions (Illumina)
|
Description |
Raw data file: ILOE-5745_FullDataTable.txt Sample name: 65664 AlternateIDRawData: 131B_INV dual-color florescent staining
|
Data processing |
Data was extracted using Illumina’s GenomeStudio v2010.3 with Genotyping module 1.8.4 software, with the default Illumina settings and Illumina HumanOmniExpress‐12v1_H manifest cluster file
|
|
|
Submission date |
May 05, 2014 |
Last update date |
Oct 01, 2014 |
Contact name |
Dariush Etemadmoghadam |
E-mail(s) |
dariush.etemadmoghadam@petermac.org
|
Phone |
61396561149
|
Organization name |
Peter MacCallum Cancer Centre
|
Street address |
St Andrew's Place
|
City |
East Melbourne |
ZIP/Postal code |
3002 |
Country |
Australia |
|
|
Platform ID |
GPL13135 |
Series (2) |
GSE57270 |
Genomic analysis of low-grade serous ovarian carcinomas [ILOE] |
GSE57280 |
Genomic analysis of low-grade serous ovarian carcinomas |
|