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Status |
Public on Aug 10, 2014 |
Title |
RA5_SFbl_4h |
Sample type |
RNA |
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|
Source name |
Fibroblasts of RA patient
|
Organism |
Homo sapiens |
Characteristics |
treatment: IL1 patient: 5 time point: 4
|
Treatment protocol |
At the end of the fourth passage, the SFB were washed in serum-free Dulbeccos modified Eagle’s medium (DMEM) and then stimulated with 10 ng/ml of either IL-1β or PDGF-D
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Growth protocol |
Negative purification of primary SFBs from RA patients (purity: > 98%) was performed as previously described by Kinne et al
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
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Hybridization protocol |
At each time point 4 the medium was removed and the cells were harvested after treatment with trypsin (0.25% in Versene; Invitrogen, Karlsruhe, Germany). After washing with phosphate-buffered saline, cells were lysed with RLT buffer (Qiagen, Hilden, Germany) and frozen at -70◦C.
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Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
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Description |
SFB from RA treated with IL1
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Data processing |
The data were RMA normalized.
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Submission date |
Jun 03, 2014 |
Last update date |
Aug 10, 2014 |
Contact name |
Peter Kupfer |
E-mail(s) |
peter.kupfer@hki-jena.de
|
Organization name |
HKI Jena
|
Street address |
Beutenbergstrasse 11a
|
City |
Jena |
ZIP/Postal code |
07745 |
Country |
Germany |
|
|
Platform ID |
GPL15445 |
Series (1) |
GSE58203 |
Stimulation of RA SFBs with IL1 or PDGF-D |
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