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Sample GSM143749 Query DataSets for GSM143749
Status Public on Jan 24, 2007
Title Samp10 Hippocampus Young Sample 1
Sample type RNA
 
Source name SAMP10 Hippocampus Young Sample 1
Organism Mus musculus
Characteristics SAMP10//Ta senescence-accelerated mouse line
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Hybridizations were performed on Affymetrix MG_U74Av2 GeneChips for 16 hr at 50C at a final cRNA concentration of 0.66 ug/ul. GeneChips were washed and stained in the Salk Megawasher.
Scan protocol GeneChips were scanned using the Affymetrix/Agilent GeneArray Scanner.
Description Gene expression data from hippocampus of one young SAMP10//Ta mouse
Data processing Data were analyzed using the Teragenomics Relational Database http://www.teragenomics.com/public/prodNServices_absolutePrecis.asp
 
Submission date Nov 07, 2006
Last update date Jan 24, 2007
Contact name Jennifer Greenhall
E-mail(s) jgreenha@ucsd.edu
Organization name The Salk Institute
Department MNL-H
Street address 10010 N. Torrey Pines Rd.
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE6238 Mechanisms of Aging in Senescence-Accelerated Mice

Data table header descriptions
ID_REF Affymetrix Probe Set Name
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
VALUE Teragenomics-calculated scaled signal intensity.

Data table
ID_REF ABS CALL VALUE
100001_at A 4.59
100002_at P 173.14
100003_at M 48.42
100004_at A 118.7
100005_at P 142.43
100006_at P 110.36
100007_at P 440.69
100009_r_at P 551.49
100010_at P 44.05
100011_at P 81.92
100012_at P 196.17
100013_at A 3.31
100014_at P 102.39
100015_at A 46.14
100016_at M 21.6
100017_at P 35.78
100018_at A 84.97
100019_at A 35.63
100020_at P 209.47
100021_at A 13.12

Total number of rows: 12488

Table truncated, full table size 221 Kbytes.




Supplementary file Size Download File type/resource
GSM143749.CEL.gz 2.7 Mb (ftp)(http) CEL

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