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Sample GSM1474151 Query DataSets for GSM1474151
Status Public on Nov 05, 2014
Title Control-2
Sample type RNA
 
Source name Liver, scrambled control ASO
Organism Mus musculus
Characteristics strain: C57BL/6J
gender: Male
age: 25 weeks
chow: HFD
Treatment protocol Mice received intraperitoneal injections of antisense oligonucleotide (ASO) directed against Mogat1 or a scrambled control ASO (25 mg/kg body weight; ISIS Pharmaceuticals, Carlsbad, CA) twice a week for three weeks. Treatments were initiated after 14 weeks of high fat diet feeding.
Growth protocol C57BL/6J male mice were fed chow providing 60% of calories from fatty acids (D12492, Research Diets Inc) starting at 6 weeks of age.
Extracted molecule total RNA
Extraction protocol Total liver mRNA was extracted with RNA Bee (Isotex Diagnostics, Friendswood, TX) based on the manufacturer's instructions.
Label biotin
Label protocol RNA transcripts were amplified by T7 linear amplification (MessageAmp TotalPrep amplification kit; ABI-Ambion).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description sample name: 937
replicate 2
Data processing The data were normalised using quantile normalisation (background was also subtracted).
 
Submission date Aug 12, 2014
Last update date Sep 15, 2023
Contact name Jun Yoshino
E-mail(s) jyoshino@med.shimane-u.ac.jp
Organization name Faculty of Medicine, Shimane University
Street address 89-1 Enya-cho
City Izumo
State/province Shimane
ZIP/Postal code 693-8501
Country Japan
 
Platform ID GPL6887
Series (1)
GSE60349 Inhibiting Monoacylglycerol Acyltransferase 1 Ameliorates Hepatic Metabolic Abnormalities, but not Inflammation and Injury in Mice

Data table header descriptions
ID_REF
VALUE quantile normalized, background-subtracted value.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 1409.28 0
ILMN_2762289 11.9505 0.1025641
ILMN_2896528 3293.641 0
ILMN_2721178 760.0711 0
ILMN_2458837 -7.130449 0.7307692
ILMN_3033922 1603.79 0
ILMN_3092673 8420.548 0
ILMN_1230777 5215.164 0
ILMN_1246069 2328.429 0
ILMN_1232042 2.916996 0.2970085
ILMN_1243193 1119.522 0
ILMN_2524361 -1.968878 0.5117521
ILMN_1242440 -0.1481117 0.4284188
ILMN_1233188 1.110928 0.366453
ILMN_2543688 65.77792 0
ILMN_1259789 38.12119 0.009615385
ILMN_2816356 19.00628 0.0534188
ILMN_1224596 47.57867 0.006410256
ILMN_1233643 6.111947 0.2126068
ILMN_2808939 3022.124 0

Total number of rows: 45281

Table truncated, full table size 1342 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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