|
| Status |
Public on Nov 01, 2014 |
| Title |
MD O3 WT CLN |
| Sample type |
SRA |
| |
|
| Source name |
Cervical lymph nodes of aged mouse 3
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
selection marker: age and organ
organ: Cervical lymph nodes
age: 22 months
treatment: none
tissue isolation: excised from PBS-perfused mouse and snap frozen on dry ice
|
| Extracted molecule |
total RNA |
| Extraction protocol |
miRNeasy (Qiagen)
http://www.sciencemag.org/content/343/6172/776.abstract?ijkey=6c89f9e625c6efc35902e948462a6d1dad095f64&keytype2=tf_ipsecsha
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 1500 |
| |
|
| Description |
processed data in Series supplementary file Y_vs_O_tissues_o.txt
|
| Data processing |
Illumina Casava1.8 software used for basecalling.
alignment: tophat with deafult parameters
Expression table done using ESAT http://garberlab.umassmed.edu/software/esat/
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
|
| |
|
| Submission date |
Oct 28, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ido Amit |
| E-mail(s) |
ido.amit@weizmann.ac.il
|
| Phone |
972-8-9343338
|
| Organization name |
Weizmann Institute of Science
|
| Department |
Immunology
|
| Street address |
234 Herzl st.
|
| City |
Rehovot |
| ZIP/Postal code |
760001 |
| Country |
Israel |
| |
|
| Platform ID |
GPL18480 |
| Series (1) |
| GSE62762 |
Aging-induced type I interferon response at the choroid plexus negatively affects brain function. |
|
| Relations |
| BioSample |
SAMN03145106 |
| SRA |
SRX744945 |
