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GEO accession:
Sample GSM1547894
Query DataSets for GSM1547894
Status
Public on Nov 18, 2014
Title
Tube KO1
Sample type
RNA
Source name
mammary stem cells, KO
Organism
Mus musculus
Characteristics
strain: 129/C57B6 mixed background
tissue: mammary gland
cell type: stem cell
genotype/variation: Bcl11a KO
Extracted molecule
total RNA
Extraction protocol
RNA from sorted cells was extracted using PicoPure RNA isolation kit (Molecular Devices) according to the manufacturer’s instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
standard Illumina scan protocol.
Description
5355441031_B
KO rep1
Data processing
All data were normalized and scaled by Partek Genomic Suite 6.4.
Submission date
Nov 18, 2014
Last update date
Nov 18, 2014
Contact name
Jack Chen
Organization name
NIH
Street address
SAIC-Frederick Miller Dr
City
Frederick
State/province
MD
ZIP/Postal code
21702
Country
USA
Platform ID
GPL18752
Series (1)
GSE63386
BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells
Data table header descriptions
ID_REF
VALUE
normalized, scaled signal
Detection p-value
Data table
ID_REF
VALUE
Detection p-value
0610005C13RIK
171.95
0.3515
0610005I04
181.725
0.58333
0610006I08RIK
1226.65
1
0610006L08RIK
161.6
0.15598
0610007C21RIK
3631.22
1
0610007J10RIK
1820.47
1
0610007L01RIK
2889.72
0.91596
0610007N19RIK
821.7
0.94647
0610007P08RIK
280
0.99608
0610007P14RIK
851.775
1
0610007P22RIK
822.75
1
0610008C08RIK
173.075
0.37927
0610008F07RIK
198.075
0.81731
0610009B14RIK
203.55
0.86432
0610009B22RIK
522.4
1
0610009D07RIK
257.75
0.89476
0610009J05RIK
1371.85
1
0610009L18RIK
182.1
0.59295
0610009O04RIK
220.65
0.93269
0610009O20RIK
563.7
1
Total number of rows:
30854
Table truncated, full table size
702 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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