GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1547895
Query DataSets for GSM1547895
Status
Public on Nov 18, 2014
Title
Tube KO2
Sample type
RNA
Source name
mammary stem cells, KO
Organism
Mus musculus
Characteristics
strain: 129/C57B6 mixed background
tissue: mammary gland
cell type: stem cell
genotype/variation: Bcl11a KO
Extracted molecule
total RNA
Extraction protocol
RNA from sorted cells was extracted using PicoPure RNA isolation kit (Molecular Devices) according to the manufacturer’s instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
standard Illumina scan protocol.
Description
5355441031_C
KO rep2
Data processing
All data were normalized and scaled by Partek Genomic Suite 6.4.
Submission date
Nov 18, 2014
Last update date
Nov 18, 2014
Contact name
Jack Chen
Organization name
NIH
Street address
SAIC-Frederick Miller Dr
City
Frederick
State/province
MD
ZIP/Postal code
21702
Country
USA
Platform ID
GPL18752
Series (1)
GSE63386
BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells
Data table header descriptions
ID_REF
VALUE
normalized, scaled signal
Detection p-value
Data table
ID_REF
VALUE
Detection p-value
0610005C13RIK
165.3
0.20406
0610005I04
166.275
0.23504
0610006I08RIK
1420.75
1
0610006L08RIK
181.525
0.59295
0610007C21RIK
3005.47
1
0610007J10RIK
1921.7
1
0610007L01RIK
2818.05
0.99792
0610007N19RIK
950.425
0.93177
0610007P08RIK
264.275
0.99948
0610007P14RIK
702.075
1
0610007P22RIK
766.675
1
0610008C08RIK
180.95
0.58333
0610008F07RIK
193.425
0.79594
0610009B14RIK
168.625
0.28739
0610009B22RIK
545.775
0.99893
0610009D07RIK
237.825
0.97652
0610009J05RIK
1500.97
1
0610009L18RIK
237.725
0.98932
0610009O04RIK
229.725
0.9765
0610009O20RIK
593.975
0.99893
Total number of rows:
30854
Table truncated, full table size
706 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
