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GEO accession:
Sample GSM1547897
Query DataSets for GSM1547897
Status
Public on Nov 18, 2014
Title
Tube WT2
Sample type
RNA
Source name
mammary stem cells, WT
Organism
Mus musculus
Characteristics
strain: 129/C57B6 mixed background
tissue: mammary gland
cell type: stem cell
genotype/variation: WT
Extracted molecule
total RNA
Extraction protocol
RNA from sorted cells was extracted using PicoPure RNA isolation kit (Molecular Devices) according to the manufacturer’s instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
standard Illumina scan protocol.
Description
5355441031_F
WT rep2
Data processing
All data were normalized and scaled by Partek Genomic Suite 6.4.
Submission date
Nov 18, 2014
Last update date
Nov 18, 2014
Contact name
Jack Chen
Organization name
NIH
Street address
SAIC-Frederick Miller Dr
City
Frederick
State/province
MD
ZIP/Postal code
21702
Country
USA
Platform ID
GPL18752
Series (1)
GSE63386
BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells
Data table header descriptions
ID_REF
VALUE
normalized, scaled signal
Detection p-value
Data table
ID_REF
VALUE
Detection p-value
0610005C13RIK
168.85
0.30662
0610005I04
195.5
0.79167
0610006I08RIK
2643.3
1
0610006L08RIK
159.875
0.13141
0610007C21RIK
4848.23
1
0610007J10RIK
2543.95
1
0610007L01RIK
1430.23
0.8572
0610007N19RIK
694.45
0.91253
0610007P08RIK
212.1
0.99617
0610007P14RIK
990.775
1
0610007P22RIK
617.575
1
0610008C08RIK
187.875
0.69231
0610008F07RIK
173.4
0.39957
0610009B14RIK
180.025
0.55556
0610009B22RIK
751.5
1
0610009D07RIK
244.65
0.9421
0610009J05RIK
1128.83
1
0610009L18RIK
233.05
0.97329
0610009O04RIK
213.275
0.92949
0610009O20RIK
549.275
1
Total number of rows:
30854
Table truncated, full table size
695 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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