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Status |
Public on Dec 31, 2016 |
Title |
sh69(2) |
Sample type |
RNA |
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Source name |
CPC-shScramble cell culture
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Organism |
Mus musculus |
Characteristics |
cell line: Sca1+ Cardiac Protenitor Cells (CPC) genotype/variation: overexpressing sh-Scramble
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Treatment protocol |
Cells were transduced with respectives lentivirus at a MOI of 10 with the appropriate dilution of the stock in 3 ml of culture medium and polybrene (SIGMA) at 8 ug/ml, for seven to eight hours. Then, inoculum was removed and cell cultures were refreshed with medium before assay.
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Growth protocol |
Sca1+ CPC were plated in culture plates pre-coated with 0.1% gelatin and were maintained at 37°C, 3% oxygen with the corresponding medium (IMDM, 10% FCS, 1% penicillin and streptomycin and 1% L-glutamine, supplemented with 10 ng/ml EGF (E9644, Sigma), 20 ng/ml FGF (450-33, Prepotech) and LIF (103 U; ESG1107, Millipore). Medium was refreshed every 2 days. Cells were passaged at 70%-80% confluency by tripsinization.
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated using the mirVana kit (Ambion). RNA was quantified and integrity was checked by agarose gel electrophoresis.
|
Label |
Cy3
|
Label protocol |
miRNA Labeling Kit (Agilent Technologies) was used to label RNA. Basically, 100 ng of total RNA were dephosphorylated and Cyanine 3-pCp molecule was ligated to the 3´ end of each RNA molecule by using T4 RNA ligase.
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Hybridization protocol |
100 ng of Cy3 labelled RNA were hybridized for 20 hours at 55ºC in a hybridization oven (G2545A, Agilent) set to 15 rpm in a final concentration of 1X GE Blocking Agent and 1X Hi-RPM Hybridization Buffer, according to manufacturer's instructions (miRNA Microarray System Protocol, Agilent Technologies).
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Scan protocol |
Arrays were scanned at 5mm resolution on an Agilent DNA Microarray Scanner (G2565BA, Agilent Technologies) using the default settings for miRNA Microarray v2.0 (miRNA Microarray System Protocol, Agilent Technologies).
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Description |
CPC-shScramble, cell culture #(2) Expression of miRNAs from Sca1+CPC overexpressing sh-Scramble
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Data processing |
Images provided by the scanner were analyzed using Agilent´s software Feature Extraction version 10.7.3.1 and protocol miRNA_105_Jan09
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Submission date |
Mar 12, 2015 |
Last update date |
Dec 31, 2016 |
Contact name |
Fatima Sanchez-Cabo |
E-mail(s) |
fscabo@cnic.es
|
Phone |
+34 91 4531200
|
Organization name |
CNIC
|
Street address |
Melchor Fernandez Almagro
|
City |
Madrid |
ZIP/Postal code |
28029 |
Country |
Spain |
|
|
Platform ID |
GPL8824 |
Series (1) |
GSE66813 |
Profile of microRNAs potentially regulated by Bmi1 in Sca1+ Cardiac Protenitor Cells (CPC) |
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