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Sample GSM17369 Query DataSets for GSM17369
Status Public on Jan 10, 2005
Title DFAL8
Sample type RNA
 
Source name Liver of female Ames dwarf mouse (df/df) with ad libitum access to standard pelleted food
Organism Mus musculus
Extracted molecule total RNA
 
Description Female Ames dwarf mouse (df/df) with ad libitum access to water and standard pelleted food (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops. Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction
 
Submission date Mar 01, 2004
Last update date May 28, 2005
Contact name Stephen R. Spindler
E-mail(s) spindler@mail.ucr.edu
Phone 909-787-3597
Fax 909-787-4434
URL http://www.biochemistry.ucr.edu/faculty/spindler.html
Organization name University of California, Riverside
Department Biochemistry
Street address
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL81
Series (2)
GSE1086 Dwarf Ad libitum
GSE1093 caloric restriction

Data table header descriptions
ID_REF
Stat Pairs Number of probe pairs for each transcription unit
Stat Pairs Used Number of probe pairs used in the analysis
VALUE MAS 5.0 Calculated intensity of the signal measured by each probe set
ABS_CALL Absent (A), Present (P), or Marginal (M) as judged by the detection P value
Detection p-value Detection P value calculated by MAS 5.0

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 17 A 0.824672
AFFX-MurIL10_at 20 20 17.1 A 0.58862
AFFX-MurIL4_at 20 20 18.7 A 0.52976
AFFX-MurFAS_at 20 20 251.6 P 0.000169
AFFX-BioB-5_at 20 20 249.5 M 0.046482
AFFX-BioB-M_at 20 20 458.6 P 0.003212
AFFX-BioB-3_at 20 20 300.8 P 0.005565
AFFX-BioC-5_at 20 20 687 P 0.000258
AFFX-BioC-3_at 20 20 482.7 P 0.000258
AFFX-BioDn-5_at 20 20 929.9 P 0.000195
AFFX-BioDn-3_at 20 20 4254.3 P 0.000446
AFFX-CreX-5_at 20 20 7738.7 P 0.00006
AFFX-CreX-3_at 20 20 10902.5 P 0.000044
AFFX-BioB-5_st 20 20 41 A 0.382599
AFFX-BioB-M_st 20 20 34.7 A 0.794268
AFFX-BioB-3_st 20 20 28.2 A 0.699394
AFFX-BioC-5_st 20 20 19.3 A 0.783476
AFFX-BioC-3_st 20 20 7.3 A 0.804734
AFFX-BioDn-5_st 20 20 129.5 A 0.327079
AFFX-BioDn-3_st 20 20 127.4 A 0.185131

Total number of rows: 12488

Table truncated, full table size 394 Kbytes.




Supplementary data files not provided

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