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Sample GSM175940 Query DataSets for GSM175940
Status Public on Apr 09, 2007
Title Skeletal Muscle BD Normal
Sample type RNA
 
Source name Male/Female; Normal/Diseased
Organism Homo sapiens
Characteristics Tissue/Cell Line [C]: skeletal_muscle
Disease/Normal or Treatment [C]: normal
Gender: M/F mix
Disease type: Normal
Treatment protocol Not treated
Growth protocol None
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on the GeneChip Human U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Normal
Data processing The data were analyzed with robust multi-array (RMA) for background correction, normalization and polishing.
 
Submission date Mar 19, 2007
Last update date Aug 28, 2018
Contact name Richard B Roth
E-mail(s) rroth@neurocrine.com
Organization name Neurocrine Biosciences, Inc.
Department Molecular Medicine
Street address 12790 El Camino Real
City San Diego
State/province CA
ZIP/Postal code 92130
Country USA
 
Platform ID GPL570
Series (1)
GSE7307 Human body index - transcriptional profiling
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
1554096_a_at 4.4430337
235618_at 23.117207
226481_at 86.687775
203075_at 66.69014
236658_at 1.8532227
212621_at 1.1577052
1557720_s_at 8.006682
242882_at 24.816168
238622_at 5.087197
1566288_at 4.8549757
223862_at 13.293743
227982_at 12.221032
235483_at 12.4047575
1566114_at 0.36178502
204150_at 54.232246
201484_at 128.73112
212061_at 31.380249
210092_at 54.572186
205145_s_at 21.873741
221594_at 13.190076

Total number of rows: 54675

Table truncated, full table size 1096 Kbytes.




Supplementary file Size Download File type/resource
GSM175940.CEL.gz 7.1 Mb (ftp)(http) CEL

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