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Sample GSM188502 Query DataSets for GSM188502
Status Public on May 29, 2007
Title 32272_SARS_SIN850_300PMT_532median
Sample type RNA
 
Source name SARS_SIN850
Organism Severe acute respiratory syndrome-related coronavirus
Characteristics Severe Acute Respiratory Syndrome (SARS) virus amplified from Vero cell culture as described in Lim PL, Kurup A, Gopalakrishna G, Chan KP, Wong CW, et al: Laboratory-Acquired Severe Acute Respiratory Syndrome. N Engl J Med 2004, 350:1740-1745, PMID: 15103000, http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=15103000
Extracted molecule total RNA
Extraction protocol RNAzol per manufacturer's instructions
Label Cy3
Label protocol Random PCR, end-label with biotin, amplify signal with streptavidin-Cy3 - see Wong et al, 2007
 
Hybridization protocol Overnight hybridization - see Wong et al, 2007
Scan protocol Axon scanners at PMT indicated in the title of data file
Description 32272_SARS_SIN850_median.txt
Data processing Apply algorithms described in Wong et al, 2007
 
Submission date May 11, 2007
Last update date May 29, 2007
Contact name Christopher Wong
E-mail(s) wongc@gis.a-star.edu.sg
Phone +65 6478 8103
Organization name Genome Institute of Singapore
Street address 60 Biopolis St #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL5159
Series (1)
GSE7779 Optimization and Clinical Validation of a Pathogen Detection Microarray

Data table header descriptions
ID_REF
VALUE Median probe signal intensity of 7 probe replicates

Data table
ID_REF VALUE
1-1 300.56
1-1e 265.11
1-1d 305.89
1-1c 324.67
1-1b 284.11
1-2 163.56
1-2e 171.33
1-2d 174.44
1-2c 218.56
1-2b 231.67
1-3 268.56
1-3e 268
1-3d 270.56
1-3c 247.33
1-3b 251.56
1-4 181.22
1-4e 191.11
1-4d 201.33
1-4c 203
1-4b 177.22

Total number of rows: 54117

Table truncated, full table size 730 Kbytes.




Supplementary file Size Download File type/resource
GSM188502_raw.txt.gz 4.6 Mb (ftp)(http) TXT
Processed data included within Sample table
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