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Sample GSM188532 Query DataSets for GSM188532
Status Public on May 29, 2007
Title 71025_#414_A2_440PMT_230506_532median
Sample type RNA
 
Source name human + pathogen; patient #414
Organism Viruses
Characteristics pediatric nasal wash specimen
Extracted molecule total RNA
Extraction protocol RNAzol per manufacturer's instructions
Label Cy3
Label protocol Random PCR, end-label with biotin, amplify signal with streptavidin-Cy3 - see Wong et al, 2007
 
Hybridization protocol Overnight hybridization - see Wong et al, 2007
Scan protocol Axon scanners at PMT indicated in the title of data file
Description 71025_#414_A2_440PMT_230506_median.txt
Data processing Apply algorithms described in Wong et al, 2007
 
Submission date May 11, 2007
Last update date May 29, 2007
Contact name Christopher Wong
E-mail(s) wongc@gis.a-star.edu.sg
Phone +65 6478 8103
Organization name Genome Institute of Singapore
Street address 60 Biopolis St #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL5159
Series (1)
GSE7779 Optimization and Clinical Validation of a Pathogen Detection Microarray

Data table header descriptions
ID_REF
VALUE Median probe signal intensity of 7 probe replicates

Data table
ID_REF VALUE
1-1 609.56
1-1e 443.89
1-1d 460.33
1-1c 440.67
1-1b 401
1-2 1102.11
1-2e 1473.78
1-2d 1251.67
1-2c 370.67
1-2b 366.56
1-3 511.67
1-3e 600.33
1-3d 609.11
1-3c 733
1-3b 859.56
1-4 5201.67
1-4e 5369
1-4d 4921.67
1-4c 2358.67
1-4b 2128.22

Total number of rows: 54117

Table truncated, full table size 735 Kbytes.




Supplementary file Size Download File type/resource
GSM188532_raw.txt.gz 4.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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