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Sample GSM188540 Query DataSets for GSM188540
Status Public on May 29, 2007
Title 73068_#832_A2_470PMT_050506_532median
Sample type RNA
 
Source name human + pathogen; patient #832
Organism Viruses
Characteristics pediatric nasal wash specimen
Extracted molecule total RNA
Extraction protocol RNAzol per manufacturer's instructions
Label Cy3
Label protocol Random PCR, end-label with biotin, amplify signal with streptavidin-Cy3 - see Wong et al, 2007
 
Hybridization protocol Overnight hybridization - see Wong et al, 2007
Scan protocol Axon scanners at PMT indicated in the title of data file
Description 73068_#832_A2_470PMT_050506_median.txt
Data processing Apply algorithms described in Wong et al, 2007
 
Submission date May 11, 2007
Last update date May 29, 2007
Contact name Christopher Wong
E-mail(s) wongc@gis.a-star.edu.sg
Phone +65 6478 8103
Organization name Genome Institute of Singapore
Street address 60 Biopolis St #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL5159
Series (1)
GSE7779 Optimization and Clinical Validation of a Pathogen Detection Microarray

Data table header descriptions
ID_REF
VALUE Median probe signal intensity of 7 probe replicates

Data table
ID_REF VALUE
1-1 627.89
1-1e 689.11
1-1d 747.78
1-1c 654.22
1-1b 702.78
1-2 1282.89
1-2e 2034.22
1-2d 748.33
1-2c 538.56
1-2b 421.78
1-3 781.11
1-3e 856.89
1-3d 1015.22
1-3c 1105.33
1-3b 1351.67
1-4 618.11
1-4e 556.78
1-4d 564
1-4c 639.89
1-4b 458.11

Total number of rows: 54117

Table truncated, full table size 736 Kbytes.




Supplementary file Size Download File type/resource
GSM188540_raw.txt.gz 4.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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