|
| Status |
Public on Nov 20, 2015 |
| Title |
input_dnapki_s15_merged_set2 |
| Sample type |
SRA |
| |
|
| Source name |
dnapki
|
| Organism |
Homo sapiens |
| Characteristics |
ip target: input
treatment (those ending with 'i' indicate inhibitor): dnapki
time: 15
matched input: none
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
none provided by submitter
none provided by submitter
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Demultiplex/Base calls with CASAVA(?)
Alignment against GRCh37.75 genome using BWA mem
Duplicates removed with PicardTools and filtered to retain only primary alignments
Peaks called with HOMER (v4.7) with default parameters of 4 fold-change and Poisson p-value of 1e-4. Matched input sample used for background distribution
Genome_build: Ensembl GRCh37.75
Supplementary_files_format_and_content: Homer-format peak files, with locus, fold change, and additional fields in tab-delimited format.
|
| |
|
| Submission date |
Nov 18, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Heeyoun Bunch |
| E-mail(s) |
heeyounbunch@gmail.com
|
| Organization name |
Kyungpook National University
|
| Department |
Applied Biosciences
|
| Street address |
80 Daehak-ro, Kyungpook National University, Agriculture and Life Sciences Building #1, Room 207
|
| City |
Daegu |
| ZIP/Postal code |
41566 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE75170 |
Transcriptional elongation requires DNA break-induced signaling |
|
| Relations |
| BioSample |
SAMN04277159 |
| SRA |
SRX1438115 |
