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| Status |
Public on Jun 23, 2016 |
| Title |
Twinpair14_twin2_time2 |
| Sample type |
genomic |
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| Source name |
Blood
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| Organism |
Homo sapiens |
| Characteristics |
tissue: blood
gender: Female
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from whole blood using a standard salting out method
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| Label |
Biotin
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| Label protocol |
Standard Illumina procedures
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| Hybridization protocol |
Standard Illumina procedures
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| Scan protocol |
Standard Illumina procedures using the iScan System
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| Data processing |
The genotype data was processed using the GenomeStudio Software (Illumina) with clustering on the project samples themselves. Samples genotyped on GPL20641 were loaded into GenomeStudio using the manifest humanomni25m-8v1-1_b (with 2,391,739 SNPs), samples genotyped on GPL13135 (except for 2_1_T1, 3_1_T1, 4_1_T1, 8_1_T1, 10_1_T1, and 12_1_T1) were loaded into GenomeStudio using the manifest HumanOmniExpress-12v1_J (with 730,526 SNPs), and 2_1_T1, 3_1_T1, 4_1_T1, 8_1_T1, 10_1_T1, and 12_1_T1 were loaded into GenomeStudio using the manifest HumanOmniExpress-12v1_A. In total, 172 samples were genotyped, but 3 (3_2_T1, 9_2_T2, and 36_1_T1) were excluded during quality control.
Processed data file contents: ID_REF - Illumina SNP name; Log R Ratio - Log R Ratio; B Allele Freq - B Allele Frequency
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| Submission date |
Dec 29, 2015 |
| Last update date |
Jun 23, 2016 |
| Contact name |
Lene Christiansen |
| E-mail(s) |
lchristiansen@health.sdu.dk
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| Organization name |
University of Southern Denmark
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| Department |
Epidemiology, Biostatistics and Biodemography
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| Street address |
J.B. Winsloews Vej 9B
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| City |
Odense C |
| ZIP/Postal code |
5000 |
| Country |
Denmark |
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| Platform ID |
GPL20641 |
| Series (1) |
| GSE76390 |
Somatically Acquired Structural Genetic Differences; a Longitudinal Study of Elderly Danish Twins |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM1985729_14_2_T2.txt.gz |
15.7 Mb |
(ftp)(http) |
TXT |
| GSM1985729_9700735088_R04C01_Grn.idat.gz |
16.3 Mb |
(ftp)(http) |
IDAT |
| GSM1985729_9700735088_R04C01_Red.idat.gz |
16.6 Mb |
(ftp)(http) |
IDAT |
| Processed data provided as supplementary file |
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