|
Status |
Public on Mar 29, 2017 |
Title |
cont7 |
Sample type |
RNA |
|
|
Source name |
lung
|
Organism |
Homo sapiens |
Characteristics |
age: 72 Sex: M race: AA bmi: 19.62 packyears: 46 copd: cont fev1.pp: 83 fev1fvc: 0.7 laa950: NA perc15: NA pi10: NA ID: 3468 tissue: lung
|
Treatment protocol |
NA
|
Growth protocol |
NA
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted from lung tissues using Allprep kit (Qiagen, Valencia, CA).
|
Label |
biotin
|
Label protocol |
standard Illumina protocol
|
|
|
Hybridization protocol |
Total RNA for each sample was hybridized onto a HumanHT-12 Expression BeadChip Array (Illumina, San Diego, CA), based on the manufacturer's protocol.
|
Scan protocol |
The BeadChip Array was scanned using an Illumina BeadArray Reader and quality control analysis was performed using Illumina GenomeStudio software
|
Description |
cont FEV1.PP: 83 sample19
|
Data processing |
Each of the samples and all probes passed quality control, and the data were background corrected, log2 transformed and quantile normalized.
|
|
|
Submission date |
Jan 15, 2016 |
Last update date |
Mar 29, 2017 |
Contact name |
Jarrett Morrow |
Organization name |
Brigham and Women's Hospital
|
Department |
Channing Division of Network Medicine
|
Street address |
181 Longwood Ave.
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02115 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (1) |
GSE76925 |
Functional interactors of genomewide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue |
|