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Sample GSM2044230 Query DataSets for GSM2044230
Status Public on Apr 01, 2016
Title Blood Infected_Day 2 KO rep 2_experiment_2
Sample type RNA
 
Source name Mouse Blood_Infected_Day 2
Organism Mus musculus
Characteristics strain: B6 IFNAR-/-
genotype: IFNAR-/-
gender: Female
tissue: Blood
treatment: Infected_Day 2
experiment: 2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
3999889009_F
Data processing The data were normalised using quantile normalisation with GeneSpring GX12.1
 
Submission date Jan 21, 2016
Last update date Apr 01, 2016
Contact name Krzysztof Potempa
E-mail(s) potempak@gmail.com
Organization name National Institute for Medical Research (NIMR)
Street address The Ridgeway
City London
ZIP/Postal code NW7 1AA
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE77102 Analysis of transcriptional signatures in response to Listeria monocytogenes infection reveals temporal and strain dependent changes in interferon signalling

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2659724 -0.41757965
ILMN_2713160 -0.41757965
ILMN_1219601 -0.001843929
ILMN_1252621 -0.1968205
ILMN_2574839 -0.41757965
ILMN_3162407 0.04437208
ILMN_2514723 -0.51466584
ILMN_2692952 0.27590978
ILMN_1257952 -0.41757965
ILMN_1236559 -0.46477175
ILMN_2910076 -0.41757965
ILMN_1240428 -0.8947232
ILMN_2459211 0.30077553
ILMN_2718462 -0.15552068
ILMN_2882078 0.13874006
ILMN_2882079 0.18665814
ILMN_2570659 -0.002547264
ILMN_2465544 -0.41757965
ILMN_2724039 -0.41757965
ILMN_2598594 -0.41757965

Total number of rows: 45281

Table truncated, full table size 1091 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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