|
| Status |
Public on Mar 05, 2016 |
| Title |
Tumor_8 |
| Sample type |
SRA |
| |
|
| Source name |
Tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: Breast Carcinoma
tissue type: triple-negative breast cancer
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA samples isolated at OriGene
SOLiD Whole Transcriptome Analysis Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
AB SOLiD System |
| |
|
| Data processing |
Basecalling performed using SOLiD system. Output (.csfasta and .qual) files were converted to XSQ Files.
Reads were mapped to hg19 using LifeScope 2.5.1
RPKM values were generated using ParTek Genomics Suite v6.6
Genome_build: hg19
Supplementary_files_format_and_content: genic RPKM values in tab-delimited text file
|
| |
|
| Submission date |
Mar 04, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Milan Radovich |
| E-mail(s) |
mradovic@iupui.edu
|
| Organization name |
Indiana University School of Medicine
|
| Street address |
980 W. Walnut St, Room C312
|
| City |
Indianapolis |
| State/province |
Indiana |
| ZIP/Postal code |
46202 |
| Country |
USA |
| |
|
| Platform ID |
GPL9520 |
| Series (1) |
| GSE78918 |
Characterizing the heterogeneity of triple-negative breast cancers using RNA Sequencing |
|
| Relations |
| BioSample |
SAMN04532566 |
| SRA |
SRX1613606 |
