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GEO accession:
Sample GSM21228
Query DataSets for GSM21228
Status
Public on Jul 19, 2004
Title
Incipient 1034
Sample type
RNA
Source name
hippocampal CA1 tissue
Organism
Homo sapiens
Characteristics
ref #: 1034
group: Incipient
nft: 17.4
braak: 5
age: 88
mmse: 20
Sex: M
pmi: 2.75
Extracted molecule
total RNA
Description
Incipient AD (MMSE 20-26); correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myelin
Keywords = inflamation
Keywords = aging
Keywords = behavior
Keywords = Alzheimer's
Keywords = microarray
Submission date
Apr 08, 2004
Last update date
Jan 19, 2017
Contact name
Eric M Blalock
E-mail(s)
eric.blalock@uky.edu
Phone
859-323-8033
Organization name
University of Kentucky
Department
Molecular and Biomedical Pharmacology
Lab
Blalock
Street address
800 Rose St.
City
Lexington
State/province
KY
ZIP/Postal code
40475
Country
USA
Platform ID
GPL96
Series (1)
GSE1297
Incipient Alzheimer's Disease: Microarray Correlation Analyses
Relations
Affiliated with
GSM697321
Data table header descriptions
ID_REF
Affymetrix gene ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
884.9
P
0.325
AFFX-BioB-M_at
1043.3
P
0.082
AFFX-BioB-3_at
516.7
P
0.391
AFFX-BioC-5_at
1771.8
P
0.105
AFFX-BioC-3_at
1764.7
P
0.476
AFFX-BioDn-5_at
1315.1
P
0.274
AFFX-BioDn-3_at
9016.2
P
0.039
AFFX-CreX-5_at
17378.8
P
1
AFFX-CreX-3_at
23429.5
P
1
AFFX-DapX-5_at
47.1
P
0.792
AFFX-DapX-M_at
23.8
A
0.911
AFFX-DapX-3_at
50.3
A
0.753
AFFX-LysX-5_at
46.1
A
0.156
AFFX-LysX-M_at
37.2
A
0.884
AFFX-LysX-3_at
8.6
A
0.035
AFFX-PheX-5_at
4.8
A
0.793
AFFX-PheX-M_at
7.1
A
0.2
AFFX-PheX-3_at
16.9
A
0.208
AFFX-ThrX-5_at
15.7
A
0.18
AFFX-ThrX-M_at
5.5
A
0.445
Total number of rows:
22283
Table truncated, full table size
530 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM21228.cel.gz
3.4 Mb
(ftp)
(http)
CEL
GSM21228.exp.gz
471 b
(ftp)
(http)
EXP
GSM21228.rpt.gz
968 b
(ftp)
(http)
RPT
GSM21228.txt.gz
199.6 Kb
(ftp)
(http)
TXT
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