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GEO accession:
Sample GSM216477
Query DataSets for GSM216477
Status
Public on Jul 31, 2008
Title
ART10
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Art10
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 08, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
239.3058
P
0.000509415
AFFX-BioB-M_at
502.7885
P
4.43E-05
AFFX-BioB-3_at
294.5566
P
0.000662269
AFFX-BioC-5_at
999.9521
P
5.17E-05
AFFX-BioC-3_at
1490.846
P
7.01E-05
AFFX-BioDn-5_at
1920.861
P
4.43E-05
AFFX-BioDn-3_at
4843.946
P
5.17E-05
AFFX-CreX-5_at
11273.91
P
4.43E-05
AFFX-CreX-3_at
14591.66
P
4.43E-05
AFFX-DapX-5_at
5.500999
A
0.8432685
AFFX-DapX-M_at
47.55951
A
0.5886198
AFFX-DapX-3_at
3.134559
A
0.9323386
AFFX-LysX-5_at
2.923351
A
0.9634309
AFFX-LysX-M_at
31.41588
A
0.7834759
AFFX-LysX-3_at
22.80391
A
0.3270654
AFFX-PheX-5_at
3.674441
A
0.9663227
AFFX-PheX-M_at
31.05467
A
0.6174008
AFFX-PheX-3_at
30.92417
A
0.5297621
AFFX-ThrX-5_at
8.514956
A
0.9219982
AFFX-ThrX-M_at
28.13551
A
0.2390627
Total number of rows:
45101
Table truncated, full table size
1431 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM216477.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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