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GEO accession:
Sample GSM22419
Query DataSets for GSM22419
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1370
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1370 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1370;Tumor.type=D;Size=2;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=61;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.9883193
3863.0
1129.0
0.5040646357700639
6459
-0.6023233
921.0
265.0
0.6586922998367329
16790
1.6193303
191.0
301.5
3.0723234999261972
4210
1.3338753
254.5
314.5
2.5207884088618826
13392
0.7697403
3154.0
3649.0
1.70496269603608
1575
0.4142543
125.0
113.5
1.3326094307833745
9300
0.5177053
170.0
146.0
1.4316756306272294
5306
0.3140353
138.0
114.0
1.2431800075837038
4514
0.2389273
120.0
100.5
1.1801143535883711
8664
-0.1844533
121.0
80.0
0.8799827529619619
1645
0.1466933
189.0
126.5
1.1070291965430563
13828
0.0569323
127.0
94.0
1.0402514920193038
3944
0.0416733
201.0
124.0
1.029306467312196
500
0.3320853
2370.0
1709.0
1.2588314206848767
21226
1.0607543
198.0
222.0
2.0860211066020526
15545
-2.2054253
1454.0
139.5
0.21682084336578245
6346
0.6900703
353.0
273.0
1.6133615747991112
4381
2.0822233
265.5
517.0
4.234592439311023
3385
-1.6098613
3669.0
635.0
0.3276299028596299
19553
2.8805993
118.0
452.0
7.3645600207307735
Total number of rows:
22575
Table truncated, full table size
1053 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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