|
| Status |
Public on Jan 29, 2008 |
| Title |
340_array |
| Sample type |
RNA |
| |
|
| Source name |
Peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
TAA; training set
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PAXgene tube and Qiagen Preanalytics Blood RNA kit
|
| Label |
digoxigenin
|
| Label protocol |
Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
|
| |
|
| Hybridization protocol |
Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
|
| Scan protocol |
Image was captured using CCD camera came with AB1700 Microarray Analyzer
|
| Description |
Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
|
| Data processing |
Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
|
| |
|
| Submission date |
Sep 19, 2007 |
| Last update date |
Jan 29, 2008 |
| Contact name |
Catalin Barbacioru |
| E-mail(s) |
catalin@appliedbiosystems.com
|
| Organization name |
Applied Biosystems
|
| Street address |
850 Lincoln Centre Dr
|
| City |
Foster City |
| State/province |
CA |
| ZIP/Postal code |
94404 |
| Country |
USA |
| |
|
| Platform ID |
GPL2986 |
| Series (1) |
| GSE9106 |
Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm |
|
