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| Status |
Public on Aug 11, 2004 |
| Title |
1073SFMC |
| Sample type |
RNA |
| |
|
| Source name |
SFMC
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| Description |
SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient
Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course.
Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
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| |
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| Submission date |
May 13, 2004 |
| Last update date |
Mar 16, 2009 |
| Contact name |
Michael Barnes |
| E-mail(s) |
michael.barnes@cchmc.org
|
| Phone |
513-636-1319
|
| Organization name |
Cincinnati Childrens Hospital Medical Center
|
| Department |
Rheumatology
|
| Lab |
Dr. David Glass
|
| Street address |
3333 Burnet Ave
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| City |
Cincinnati |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platform ID |
GPL8300 |
| Series (1) |
| GSE1402 |
Juvenile Rheumatoid Arthritis Profiles In PBMC and SFMC |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
Normalized expression value; GeneSpring4 |
| ABS_CALL |
Present(P), absent (A) or marginal (M) calls; MAS 5.0 |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
| 100_g_at |
1.1353419 |
A |
| 1000_at |
1.6032312 |
P |
| 1001_at |
0.9113534 |
A |
| 1002_f_at |
0.95141613 |
A |
| 1003_s_at |
0.42563784 |
A |
| 1004_at |
0.7638202 |
A |
| 1005_at |
0.56667346 |
P |
| 1006_at |
0.5558432 |
A |
| 1007_s_at |
0.95999044 |
A |
| 1008_f_at |
1.9248778 |
P |
| 1009_at |
0.96753806 |
P |
| 101_at |
0.9855392 |
A |
| 1010_at |
5.6609573 |
A |
| 1011_s_at |
0.8208418 |
P |
| 1012_at |
1.3724599 |
P |
| 1013_at |
0.8942325 |
A |
| 1014_at |
1.219402 |
P |
| 1015_s_at |
1.0880665 |
A |
| 1016_s_at |
0.5463456 |
A |
| 1017_at |
0.8184148 |
A |
Total number of rows: 12625
Table truncated, full table size 261 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM23201.CEL.gz |
2.6 Mb |
(ftp)(http) |
CEL |
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