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Status
Public on Aug 12, 2004
Title
GM11880_rep2
Sample type
RNA
Source name
Lymphoblastoid cell line
Organism
Homo sapiens Characteristics
Coriell cell line repository identifier: GM11880http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM11880
Biomaterial provider
Coriell Cell Repositories
Extracted molecule
total RNA
Description
Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees. The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion. Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).
Submission date
Jun 17, 2004
Last update date
Nov 30, 2005
Contact name
Michael Patrick Morley
E-mail(s)
mmorley@pennmedicine.upenn.edu Phone
215-898-2026
Organization name
Perelman School of Medicine at the University of Pennsylvania
Department
Penn Cardiovascular Institute
Street address
3400 Civic Center Blvd, Bldg 421
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL201 Series (2)
GSE1485 Natural variation in human gene expression
GSE3894 Heterozygous carriers of Nijmegen Breakage Syndrome Have a Distinct Gene Expression Phenotype.
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table ID_REF VALUE ABS_CALL 1007_s_at
475.9
P
1053_at
421.5
P
117_at
73
M
121_at
540.2
P
1255_g_at
2.8
A
1294_at
918.6
P
1316_at
51.5
P
1320_at
4.7
A
1431_at
18.2
A
1438_at
16.7
A
1487_at
374.4
P
1494_f_at
120.8
P
1598_g_at
35.2
A
160020_at
127
A
1729_at
627.5
P
1773_at
54.5
A
177_at
49.9
A
1861_at
105
A
200000_s_at
1860.1
P
200001_at
2410.5
P
8793 156 Kbytes .Supplementary file Size Download File type/resource GSM25478.CEL.gz
1.3 Mb
(ftp) (http) CEL
