|
| Status |
Public on Jan 26, 2008 |
| Title |
E1; PATIENT_ID: PA16; CONDITION: co-cultured, E2, PG |
| Sample type |
RNA |
| |
|
| Source name |
Breast
|
| Organism |
Homo sapiens |
| Characteristics |
SAMPLE_NAME: E1
PATIENT_ID: PA16
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
|
| |
|
| Hybridization protocol |
standard Affymetrix procedure
|
| Scan protocol |
standard Affymetrix procedure
|
| Description |
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
| Data processing |
dChip
|
| |
|
| Submission date |
Jan 24, 2008 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Junhee Seok |
| E-mail(s) |
jseok@stanford.edu
|
| Organization name |
Stanford University
|
| Street address |
318 Campus Drive W310 - Davis Lab
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE10270 |
Bisphenol A induces a profile of tumor aggressiveness in high-risk cells of breast cancer patients |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
