|
Status |
Public on Jul 05, 2019 |
Title |
Cirrh-Pt38 |
Sample type |
genomic |
|
|
Source name |
Non-tumor cirrhotic liver
|
Organism |
Homo sapiens |
Characteristics |
tissue: Non-tumor cirrhotic liver pathologic classification: Cirrhosis pathologic subclassification: Cirrhotic tissue preparation: FFPE
|
Treatment protocol |
Previous treatment with the Infinium FFPE restoration kit (Illumina) was performed for FFPE samples.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from seven to ten macrodissected FFPE sections (5 μm) using the automated procedure QIAcube and QIAGEN spin columns (Qiagen, Hilden, Germany). For fresh-frozen samples, tissues were processed for gDNA extraction using the Invitrogen ChargeSwitch genomic DNA Mini Tissue.
|
Label |
C-Bio and A-DNP
|
Label protocol |
Standard Illumina protocol
|
|
|
Hybridization protocol |
Standard Illumina protocol
|
Scan protocol |
Standard Illumina protocol
|
Description |
Sample name: NY5228 Genomic DNA extracted from non-tumoral cirrhotic tissue was genotyped using HumanOmniExpress-24 v1.1 BeadChip (Illumina).
|
Data processing |
Genotype, Log R ratio (LRR, reflecting total copy number) and B-allele frequency (BAF) obtained from GenomeStudio were used for CNV detection.
|
|
|
Submission date |
May 07, 2017 |
Last update date |
Jul 05, 2019 |
Contact name |
Sara Torrecilla |
Organization name |
IDIBAPS
|
Lab |
Liver Cancer Translational Research Laboratory
|
Street address |
Rossello Street, 149
|
City |
Barcelona |
State/province |
Catalonia |
ZIP/Postal code |
08036 |
Country |
Spain |
|
|
Platform ID |
GPL22678 |
Series (2) |
GSE98619 |
Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma [early CNV] |
GSE98620 |
Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma |
|