GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM2622
Query DataSets for GSM2622
Status
Public on Nov 13, 2002
Title
D3_TP-24_I
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 3 Time point 24 hours
post Infection with HIV-1, RF
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs in Average
Trimmed probe pair set
Positive Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs in Average
Positive Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
14
2
20
0.7
11240
P
AFFX-BioB-M_at
19
1
19
0.95
17235
P
AFFX-BioB-3_at
16
2
17
0.8
23749
P
AFFX-BioC-5_at
17
0
19
0.85
37943
P
AFFX-BioC-3_at
19
0
20
0.95
47779
P
AFFX-BioDn-5_at
19
0
19
0.95
22434
P
AFFX-BioDn-3_at
18
0
20
0.9
99020
P
AFFX-CreX-5_at
19
0
20
0.95
289583
P
AFFX-CreX-3_at
18
0
20
0.9
288783
P
AFFX-BioB-5_st
6
4
18
0.3
1838
A
AFFX-BioB-M_st
4
4
18
0.2
-453
A
AFFX-BioB-3_st
4
6
19
0.2
-1451
A
AFFX-BioC-5_st
4
8
18
0.2
-2972
A
AFFX-BioC-3_st
5
6
19
0.25
1044
A
AFFX-BioDn-5_st
9
5
19
0.45
3282
A
AFFX-BioDn-3_st
7
3
18
0.35
850
A
AFFX-CreX-5_st
9
6
19
0.45
1758
A
AFFX-CreX-3_st
4
5
18
0.2
-862
A
hum_alu_at
59
0
69
0.86
299345
P
AFFX-DapX-5_at
8
6
18
0.4
2918
A
Total number of rows:
7129
Table truncated, full table size
207 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
