|
| Status |
Public on Jul 05, 2019 |
| Title |
Dysplastic-Pt54 |
| Sample type |
RNA |
| |
|
| Source name |
Pre-malignant dysplastic nodule from cirrhotic liver
|
| Organism |
Homo sapiens |
| Characteristics |
pathologic classification: Dysplasia
tissue type: FFPE
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction was performed on four to six macrodissected sections (5 μm) from each FFPE block using the automated procedure QIAcube and QIAGEN spin columns (Qiagen, Hilden, Germany). Total RNA (500ng) was used for whole-genome gene-expression profiling.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Standard Illumina protocol
|
| Description |
NY702
|
| Data processing |
Raw data were normalized using cubic spline algorithm implemented in the Illumina Normalizer module of the GenePattern analysis toolkit (www.broadinstitute.org/genepattern) as previously described (Sia D et al, Gastroenterology, 2013).
|
| |
|
| Submission date |
Aug 08, 2017 |
| Last update date |
Jul 05, 2019 |
| Contact name |
Sara Torrecilla |
| Organization name |
IDIBAPS
|
| Lab |
Liver Cancer Translational Research Laboratory
|
| Street address |
Rossello Street, 149
|
| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL18281 |
| Series (2) |
| GSE98620 |
Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma |
| GSE102383 |
Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma [sHCC1] |
|
