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Sample GSM2743433 Query DataSets for GSM2743433
Status Public on Mar 01, 2018
Title Mim6_24h_L_Midbrain
Sample type RNA
 
Source name Left midbrain from brain Microcebus murinus 24h after CAV-2 infection, contralateral side
Organism Microcebus murinus
Characteristics gender: female
age: 2 year old
cav-2 infection helper dependent 109 physical particles: Contralateral to CAV-2 infection
brain tissue: Midbrain
Growth protocol Animals were all born in captivity in our breeding colony (CECEMA, University of Montpellier, France). 12 animals were used in this study. All animal experiments were conducted in strict accordance with the European Union Directive (2010/63/EU) for the care and the use of laboratory animals (Animal authorization CE-LR-0502, ethical committee of the Languedoc-Roussillon, France).
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was performed using Rneasy mini Kit (QIAGEN, Santa Clarina, CA) according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 1 à 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Agilent Scanner 3000.
Description Gene expression changes induced by CAV-2 in primate midbrain, 24h after infection
Data processing he data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date Aug 16, 2017
Last update date Mar 01, 2018
Contact name Gina DEVAU
E-mail(s) gina.devau@umontpellier.fr
Phone 33 467144830
Organization name Inserm U1198-UM-EPHE
Department Universite de Montpellier CC105
Lab Mecanismes Moleculaires dans les Demences Neurologiques (MMDN)
Street address Place Eugene Bataillon
City Montpellier
ZIP/Postal code 34095 cedex5
Country France
 
Platform ID GPL570
Series (2)
GSE102709 Gene expression changes in the midbrain of Microcebus murinus induced by Canine adenovirus type 2 (CAV-2)
GSE103099 Helper-dependent CAV-2 vector-mediated LRRK2G2019S expression in the M. murinus brain induces Parkinson's disease-like histological lesions and motor symptoms

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
Mim6_24h_L_Midbrain.mas5-Detection
Mim6_24h_L_Midbrain.mas5-Detection p-value

Data table
ID_REF VALUE Mim6_24h_L_Midbrain.mas5-Detection Mim6_24h_L_Midbrain.mas5-Detection p-value
AFFX-BioB-5_at 2500.921 P 5.167325E-05
AFFX-BioB-M_at 4471.265 P 4.428729E-05
AFFX-BioB-3_at 2639.183 P 4.428729E-05
AFFX-BioC-5_at 6598.259 P 5.167325E-05
AFFX-BioC-3_at 8408.371 P 5.167325E-05
AFFX-BioDn-5_at 16095.73 P 4.428729E-05
AFFX-BioDn-3_at 34460.1 P 6.021112E-05
AFFX-CreX-5_at 74208.71 P 5.167325E-05
AFFX-CreX-3_at 79643.27 P 4.428729E-05
AFFX-DapX-5_at 2915.14 P 4.428729E-05
AFFX-DapX-M_at 7946.931 P 9.450604E-05
AFFX-DapX-3_at 12798.81 P 4.428729E-05
AFFX-LysX-5_at 552.5585 P 5.167325E-05
AFFX-LysX-M_at 1005.16 P 0.0001095398
AFFX-LysX-3_at 1797.267 P 4.428729E-05
AFFX-PheX-5_at 1030.533 P 5.167325E-05
AFFX-PheX-M_at 1273.877 P 4.428729E-05
AFFX-PheX-3_at 1198.517 P 4.428729E-05
AFFX-ThrX-5_at 538.2894 P 5.167325E-05
AFFX-ThrX-M_at 1228.277 P 0.0001267976

Total number of rows: 54675

Table truncated, full table size 1646 Kbytes.




Supplementary file Size Download File type/resource
GSM2743433_Mim6_24h_L_Midbrain.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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