|
| Status |
Public on Sep 04, 2018 |
| Title |
BH150464-2_JS70020 3-Ca |
| Sample type |
RNA |
| |
|
| Source name |
BH150464-2
|
| Organism |
Homo sapiens |
| Characteristics |
disease: squamous cell carcinoma (SCC)
tissue: tumor
tissue type: fresh tissue
|
| Treatment protocol |
Two types of samples from 3 pairs of tumor/adjacent normal tissue paraffin specimens and 1 pair of tumor/adjacent normal fresh tissue samples.
|
| Growth protocol |
Tissues from HIV associated lung cancer
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
| Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
|
| Description |
Ca-tumor-fresh
|
| Data processing |
The data were nomanized by RMA with Parteck Genomic Suit 7.1
|
| |
|
| Submission date |
Nov 15, 2017 |
| Last update date |
Sep 05, 2018 |
| Contact name |
WeiPing Chen |
| E-mail(s) |
weipingChen@niddk.nih.gov
|
| Phone |
301-496-0175
|
| Organization name |
NIDDK/NIH
|
| Department |
GCL
|
| Lab |
Genomics Core Lab
|
| Street address |
Bldg 8, Room 1A11, NIDDK/NIH
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE106937 |
Molecular Changes of Lung Malignancy in HIV Infection |
|
