|
| Status |
Public on Apr 25, 2018 |
| Title |
PACEIIQ |
| Sample type |
SRA |
| |
|
| Source name |
L363
|
| Organism |
Homo sapiens |
| Characteristics |
genotype: ELL2 knock-out
disease state: Multiple Myelom
cell line: L363
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Cultured cells were harvested and total RNA was prepared using Rneasy mini kit from QIAGEN
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
GEO-ELL2-L363.txt
|
| Data processing |
Sequence alignment to hg38 genome assembly uing TopHat v2.1.1 and Bowtie 2.2.6.0
Estimation of gene expresion values uing CuffLinks 2.2.1
Genome_build: hg38
Supplementary_files_format_and_content: Tab-delimited text with gene expression values (FPKM)
|
| |
|
| Submission date |
Feb 27, 2018 |
| Last update date |
Apr 25, 2018 |
| Contact name |
Björn Nilsson |
| E-mail(s) |
bjorn.nilsson@med.lu.se
|
| Organization name |
Lund University
|
| Department |
Hematology and Transfusion Medicine
|
| Street address |
BMC
|
| City |
Lund |
| ZIP/Postal code |
22184 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL18573 |
| Series (2) |
| GSE111199 |
The multiple myeloma risk allele at 5q15 lowers ELL2 expression and increases ribosomal gene expression [ELL2 KO] |
| GSE111211 |
The multiple myeloma risk allele at 5q15 lowers ELL2 expression and increases ribosomal gene expression |
|
| Relations |
| BioSample |
SAMN08617355 |
| SRA |
SRX3747458 |
