GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM305433
Query DataSets for GSM305433
Status
Public on Aug 13, 2008
Title
F. novicida infected D3_FN
Sample type
RNA
Source name
peripheral blood monocytes
Organism
Homo sapiens
Characteristics
healthy adult
Treatment protocol
100 MOI of F. novicida or Schu S4 for 24 hours
Growth protocol
RPMI-1640 with 10% FBS
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Affymetrix standard
Description
none
Data processing
R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
Submission date
Jul 14, 2008
Last update date
Aug 28, 2018
Contact name
Jonathan P Butchar
E-mail(s)
jon.butchar@osumc.edu
Organization name
The Ohio State University
Department
Internal Medicine
Lab
Tridandapani
Street address
400 W. 12th Avenue
City
Columbus
State/province
OH
ZIP/Postal code
43210
Country
USA
Platform ID
GPL570
Series (1)
GSE12108
Microarray analysis of human monocytes infected with Francisella tularensis
Relations
Reanalyzed by
GSE49910
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
log2 expression value, calculated by gcrma
Data table
ID_REF
VALUE
1007_s_at
5.7993386953923
1053_at
4.20246775682417
117_at
8.7358235167114
121_at
6.94723043661924
1255_g_at
2.32824893677822
1294_at
4.80361316923944
1316_at
2.90962326728437
1320_at
2.32824893677822
1405_i_at
11.7499855691718
1431_at
2.32824893677822
1438_at
2.32824893677822
1487_at
4.80410570632408
1494_f_at
2.46733033511325
1552256_a_at
3.41148226241902
1552257_a_at
4.05969436179384
1552258_at
3.44070577437007
1552261_at
2.3292883573124
1552263_at
5.74503290036919
1552264_a_at
6.42008330367004
1552266_at
2.32824893677822
Total number of rows:
54675
Table truncated, full table size
1480 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM305433.CEL.gz
4.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
